Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   WHQ29_RS03355 Genome accession   NZ_CP148190
Coordinates   631058..631369 (+) Length   103 a.a.
NCBI ID   WP_015016496.1    Uniprot ID   A0A3X8SVA4
Organism   Campylobacter jejuni strain Z1323CCJ0080     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 626058..636369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ29_RS03345 (WHQ29_03345) - 626740..627381 (+) 642 WP_002851542.1 HAD family hydrolase -
  WHQ29_RS03350 (WHQ29_03350) nifJ 627474..631034 (+) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WHQ29_RS03355 (WHQ29_03355) ctsR 631058..631369 (+) 312 WP_015016496.1 hypothetical protein Machinery gene
  WHQ29_RS03360 (WHQ29_03360) ctsD 631347..632759 (+) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHQ29_RS03365 (WHQ29_03365) ctsP 632752..633360 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHQ29_RS03370 (WHQ29_03370) ctsX 633364..633951 (+) 588 WP_052823199.1 hypothetical protein Machinery gene
  WHQ29_RS03375 (WHQ29_03375) ctsE 633941..635500 (+) 1560 WP_052823198.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12457.35 Da        Isoelectric Point: 5.8722

>NTDB_id=952467 WHQ29_RS03355 WP_015016496.1 631058..631369(+) (ctsR) [Campylobacter jejuni strain Z1323CCJ0080]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIILDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=952467 WHQ29_RS03355 WP_015016496.1 631058..631369(+) (ctsR) [Campylobacter jejuni strain Z1323CCJ0080]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATACTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3X8SVA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99