Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACH6FI_RS06660 Genome accession   NZ_CP172364
Coordinates   1221098..1221649 (+) Length   183 a.a.
NCBI ID   WP_002853013.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH021     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1216098..1226649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FI_RS06625 (ACH6FI_06620) - 1216288..1216713 (+) 426 WP_002856557.1 N-acetyltransferase -
  ACH6FI_RS06630 (ACH6FI_06625) - 1216777..1217397 (+) 621 WP_395766395.1 NAD(P)H-dependent oxidoreductase -
  ACH6FI_RS06635 (ACH6FI_06630) - 1217397..1218002 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  ACH6FI_RS06640 (ACH6FI_06635) pgsA 1218127..1218663 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACH6FI_RS06645 (ACH6FI_06640) rseP 1218660..1219766 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  ACH6FI_RS06650 (ACH6FI_06645) - 1219759..1220625 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  ACH6FI_RS06655 (ACH6FI_06650) rpsF 1220712..1221089 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  ACH6FI_RS06660 (ACH6FI_06655) ssb 1221098..1221649 (+) 552 WP_002853013.1 single-stranded DNA-binding protein Machinery gene
  ACH6FI_RS06665 (ACH6FI_06660) rpsR 1221660..1221920 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  ACH6FI_RS06670 (ACH6FI_06665) lon 1221980..1224355 (-) 2376 WP_395766396.1 endopeptidase La -
  ACH6FI_RS06675 (ACH6FI_06670) bamD 1224372..1225019 (-) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  ACH6FI_RS06680 (ACH6FI_06675) fliW 1225180..1225569 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  ACH6FI_RS06685 (ACH6FI_06680) proC 1225569..1226300 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  ACH6FI_RS06690 (ACH6FI_06685) ctsT 1226297..1226599 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20710.60 Da        Isoelectric Point: 5.0431

>NTDB_id=952436 ACH6FI_RS06660 WP_002853013.1 1221098..1221649(+) (ssb) [Campylobacter jejuni strain YH021]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=952436 ACH6FI_RS06660 WP_002853013.1 1221098..1221649(+) (ssb) [Campylobacter jejuni strain YH021]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361