Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | WHQ47_RS05340 | Genome accession | NZ_CP148172 |
| Coordinates | 1024470..1024772 (+) | Length | 100 a.a. |
| NCBI ID | WP_002853046.1 | Uniprot ID | Q0P9H7 |
| Organism | Campylobacter jejuni strain Z1323HCJ0023 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1019470..1029772
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WHQ47_RS05315 (WHQ47_05315) | rpsR | 1019833..1020093 (+) | 261 | WP_002853032.1 | 30S ribosomal protein S18 | - |
| WHQ47_RS05320 (WHQ47_05320) | lon | 1020153..1022528 (-) | 2376 | WP_002852988.1 | endopeptidase La | - |
| WHQ47_RS05325 (WHQ47_05325) | - | 1022545..1023192 (-) | 648 | WP_002852961.1 | outer membrane protein assembly factor BamD | - |
| WHQ47_RS05330 (WHQ47_05330) | fliW | 1023353..1023742 (+) | 390 | WP_002852982.1 | flagellar assembly protein FliW | - |
| WHQ47_RS05335 (WHQ47_05335) | proC | 1023742..1024473 (+) | 732 | WP_002859150.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| WHQ47_RS05340 (WHQ47_05340) | ctsT | 1024470..1024772 (+) | 303 | WP_002853046.1 | type II secretion system protein | Machinery gene |
| WHQ47_RS05345 (WHQ47_05345) | - | 1024769..1025431 (+) | 663 | WP_002858296.1 | hypothetical protein | - |
| WHQ47_RS05350 (WHQ47_05350) | - | 1025428..1025880 (+) | 453 | WP_002859148.1 | hypothetical protein | - |
| WHQ47_RS05355 (WHQ47_05355) | hemD | 1025877..1026506 (-) | 630 | WP_002852819.1 | uroporphyrinogen-III synthase | - |
| WHQ47_RS05360 (WHQ47_05360) | thiE | 1026484..1027116 (-) | 633 | WP_002852670.1 | thiamine phosphate synthase | - |
| WHQ47_RS05365 (WHQ47_05365) | thiD | 1027106..1027918 (-) | 813 | WP_338842138.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| WHQ47_RS05370 (WHQ47_05370) | - | 1027915..1028601 (-) | 687 | WP_002852847.1 | endonuclease III domain-containing protein | - |
| WHQ47_RS05375 (WHQ47_05375) | - | 1028598..1029359 (-) | 762 | WP_002852748.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 12162.27 Da Isoelectric Point: 6.2957
>NTDB_id=952171 WHQ47_RS05340 WP_002853046.1 1024470..1024772(+) (ctsT) [Campylobacter jejuni strain Z1323HCJ0023]
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE
Nucleotide
Download Length: 303 bp
>NTDB_id=952171 WHQ47_RS05340 WP_002853046.1 1024470..1024772(+) (ctsT) [Campylobacter jejuni strain Z1323HCJ0023]
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
99 |
100 |
0.99 |