Detailed information NTG0952122

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: ACH6FO_RS06170
• Genome accession: NZ_CP172351
• Coordinates: 1182814..1184154 (-)
• Length: 446 a.a.
• NCBI ID: WP_002854001.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain YH028
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1177814..1189154

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACH6FO_RS06145 (ACH6FO_06145)	-	1177951..1178721 (+)	771	WP_002877094.1	MetQ/NlpA family ABC transporter substrate-binding protein	-
ACH6FO_RS06150 (ACH6FO_06150)	metE	1178733..1180997 (+)	2265	WP_002877092.1	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	-
ACH6FO_RS06155 (ACH6FO_06155)	metF	1181007..1181855 (+)	849	WP_002859283.1	methylenetetrahydrofolate reductase [NAD(P)H]	-
ACH6FO_RS06160 (ACH6FO_06160)	-	1181877..1182068 (-)	192	WP_002852856.1	membrane protein	-
ACH6FO_RS06165 (ACH6FO_06165)	atpB	1182065..1182745 (-)	681	WP_022552339.1	F0F1 ATP synthase subunit A	-
ACH6FO_RS06170 (ACH6FO_06170)	radA	1182814..1184154 (-)	1341	WP_002854001.1	DNA repair protein RadA	Machinery gene
ACH6FO_RS06175 (ACH6FO_06175)	pilA	1184154..1185020 (-)	867	WP_002858085.1	signal recognition particle-docking protein FtsY	Machinery gene
ACH6FO_RS06180 (ACH6FO_06180)	-	1185020..1185577 (-)	558	WP_002866214.1	TlpA disulfide reductase family protein	-
ACH6FO_RS06185 (ACH6FO_06185)	-	1185660..1186286 (+)	627	WP_002860439.1	5-formyltetrahydrofolate cyclo-ligase	-
ACH6FO_RS06190 (ACH6FO_06190)	rny	1186207..1187760 (+)	1554	WP_002853829.1	ribonuclease Y	-
ACH6FO_RS06195 (ACH6FO_06195)	-	1187769..1188326 (+)	558	WP_002866215.1	DedA family protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49038.94 Da
• Isoelectric Point: 6.9288

>NTDB_id=952122 ACH6FO_RS06170 WP_002854001.1 1182814..1184154(-) (radA) [Campylobacter jejuni strain YH028]
MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVLKELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKDYSILIIDSIQTLYSNKITSAAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM

Nucleotide

• Length: 1341 bp

>NTDB_id=952122 ACH6FO_RS06170 WP_002854001.1 1182814..1184154(-) (radA) [Campylobacter jejuni strain YH028]
ATGGCAAAAAATAAAGCACTTTTTGAATGTCAAGCTTGTGGAAATCAACAAAGCAAATGGCTTGGAAAATGTCCTGATTG
TGGAGCTTGGGATAGTTTTGTAGAATTAAAAGCTGAGCAAATTAAAGTTTTAAAAGAGCTTGCGCAAGTTAGTATGAAAA
CAAGTGAGGCTGTTTGTATTGAAGATGTGGAGTTAGAACATTTTACAAGATACAGCACAGATGATAATGAGCTTGATTTG
GTTTTAGGCGGAGGGCTTGTTGAAGGTTCTTTAGTGCTTATAGGCGGAAGTCCAGGTGTGGGAAAATCTACACTTTTGTT
AAAAATTGCTTCAAATTTAGCTAAACAGGGTAAAAAAGTGCTTTATGTCAGTGGCGAAGAAAGTAAAGCTCAGATTAAAT
TAAGAGCTGATCGTCTTGAGGCTAATACTCCGAATTTATTTTTACTTACTGAACTTTGCCTTGAAAATATTTTAGAAGAA
TTGCACAAAAAAGATTATAGCATTCTTATCATTGATTCTATACAAACTTTATATTCAAATAAAATTACTTCAGCAGCAGG
AAGCATCACTCAAGTGCGTGAGATTACTTTTGAACTTATGCGTGTGAGTAAGGCTTATAATATCAGTACTTTTATCATAG
GGCATATTACTAAAGAAGGTGCTATAGCAGGGCCTAGGGTTCTTGAGCATATGGTAGATGTGGTGCTTTATTTTGAAGGA
GATGCCACTAAAGAAATCAGACTTTTAAGAGGCTTTAAAAATCGTTTTGGTGGAACGAATGAAGTAGGTATTTTTGAGAT
GACTGCTAAGGGTTTGATCAGTGCAAAAGATTTGGCAAATCGTTTTTTTACTCGTGGAAAGGCTATTTCAGGAAGTGCTT
TAGGTGTTGTGATGGAAGGATCTCGTGCCTTGGTTTTAGAAGTTCAAGCTTTAGTGTGCGAAAGTTCTTATCCAAAACGC
AGCGCTACAGGATATGAAAAAAATCGCTTAGATATGCTTTTGGCTTTGCTTGAAAGAAAACTTGAAATTCCTTTAGGGCA
TTATGATGTATTTGTAAATATTAGCGGCGGAGTAAAAGTAAGTGAAACTGCTGCGGATTTGGCTGTGGTTGCTGCGATTA
TTTCAAGTTTTAAAAATCGCCCTTTGAGCAAAGATAGTATTTTTATAGGGGAGCTTAGTTTAAATGGAGAAATTAGAGAG
GTTTTTAGCCTTGATACGCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCCATTGTTCCTTCTAAGCCTTTGGA
AGATATAGGGCTTAAGTGTTTTGTTGCTAAAGAACTTTCGCAAGTTTTAGAATGGATGTAA

Domains

Predicted by InterProScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (347-423)

• AAA domain (AAA_25) (71-220)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus pneumoniae R6	46.085	100	0.462
radA	Streptococcus pneumoniae Rx1	46.085	100	0.462
radA	Streptococcus pneumoniae D39	46.085	100	0.462
radA	Streptococcus pneumoniae TIGR4	46.085	100	0.462
radA	Streptococcus mitis SK321	46.067	99.776	0.46
radA	Streptococcus mitis NCTC 12261	46.067	99.776	0.46
radA/sms	Bacillus subtilis subsp. subtilis str. 168	46.667	97.534	0.455