Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   WHQ31_RS06465 Genome accession   NZ_CP148168
Coordinates   1261577..1262092 (-) Length   171 a.a.
NCBI ID   WP_002875272.1    Uniprot ID   A0A5T0KSE7
Organism   Campylobacter jejuni strain Z1323HCJ0028     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1256577..1267092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ31_RS06450 (WHQ31_06450) - 1256692..1258506 (-) 1815 WP_338878029.1 motility associated factor glycosyltransferase family protein -
  WHQ31_RS06455 (WHQ31_06455) - 1258503..1260326 (-) 1824 WP_338878030.1 motility associated factor glycosyltransferase family protein -
  WHQ31_RS06460 (WHQ31_06460) - 1260336..1261577 (-) 1242 WP_338878031.1 DUF2920 family protein -
  WHQ31_RS06465 (WHQ31_06465) ctsG 1261577..1262092 (-) 516 WP_002875272.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHQ31_RS06470 (WHQ31_06470) tsaD 1262093..1263100 (-) 1008 WP_032583832.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  WHQ31_RS06475 (WHQ31_06475) - 1263097..1264491 (-) 1395 WP_038813975.1 M99 family carboxypeptidase catalytic domain-containing protein -
  WHQ31_RS06480 (WHQ31_06480) dxr 1264493..1265563 (-) 1071 WP_032583833.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  WHQ31_RS06485 (WHQ31_06485) cdsA 1265560..1266285 (-) 726 WP_002889945.1 phosphatidate cytidylyltransferase -
  WHQ31_RS06490 (WHQ31_06490) - 1266294..1266632 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18650.51 Da        Isoelectric Point: 6.4682

>NTDB_id=952123 WHQ31_RS06465 WP_002875272.1 1261577..1262092(-) (ctsG) [Campylobacter jejuni strain Z1323HCJ0028]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLLFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=952123 WHQ31_RS06465 WP_002875272.1 1261577..1262092(-) (ctsG) [Campylobacter jejuni strain Z1323HCJ0028]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTCTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T0KSE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936