Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACH6FO_RS05485 Genome accession   NZ_CP172351
Coordinates   1050478..1051029 (+) Length   183 a.a.
NCBI ID   WP_002861797.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH028     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1045478..1056029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FO_RS05450 (ACH6FO_05450) - 1045667..1046092 (+) 426 WP_002777060.1 N-acetyltransferase -
  ACH6FO_RS05455 (ACH6FO_05455) - 1046157..1046777 (+) 621 WP_052791877.1 nitroreductase family protein -
  ACH6FO_RS05460 (ACH6FO_05460) - 1046777..1047382 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  ACH6FO_RS05465 (ACH6FO_05465) pgsA 1047507..1048043 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACH6FO_RS05470 (ACH6FO_05470) rseP 1048040..1049146 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  ACH6FO_RS05475 (ACH6FO_05475) - 1049139..1050005 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  ACH6FO_RS05480 (ACH6FO_05480) rpsF 1050092..1050469 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  ACH6FO_RS05485 (ACH6FO_05485) ssb 1050478..1051029 (+) 552 WP_002861797.1 single-stranded DNA-binding protein Machinery gene
  ACH6FO_RS05490 (ACH6FO_05490) rpsR 1051040..1051300 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  ACH6FO_RS05495 (ACH6FO_05495) lon 1051361..1053736 (-) 2376 WP_002866098.1 endopeptidase La -
  ACH6FO_RS05500 (ACH6FO_05500) bamD 1053753..1054400 (-) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  ACH6FO_RS05505 (ACH6FO_05505) fliW 1054561..1054950 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  ACH6FO_RS05510 (ACH6FO_05510) proC 1054950..1055681 (+) 732 WP_002932769.1 pyrroline-5-carboxylate reductase Machinery gene
  ACH6FO_RS05515 (ACH6FO_05515) ctsT 1055678..1055980 (+) 303 WP_057042823.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20649.56 Da        Isoelectric Point: 5.0431

>NTDB_id=952114 ACH6FO_RS05485 WP_002861797.1 1050478..1051029(+) (ssb) [Campylobacter jejuni strain YH028]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGGNSNAPQQGGIGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=952114 ACH6FO_RS05485 WP_002861797.1 1050478..1051029(+) (ssb) [Campylobacter jejuni strain YH028]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCGCAAAGCGGTAGTGCTATTGG
AGCTTCTGCTATCGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAGGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGCGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCGGCAA
TTCCAATGCTCCACAACAAGGTGGAATTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.158

100

0.372
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361