Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACH6FB_RS05645 Genome accession   NZ_CP172348
Coordinates   1088124..1088675 (+) Length   183 a.a.
NCBI ID   WP_002853013.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH030     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1083124..1093675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FB_RS05610 (ACH6FB_05610) - 1083314..1083739 (+) 426 WP_002869469.1 N-acetyltransferase -
  ACH6FB_RS05615 (ACH6FB_05615) - 1083803..1084423 (+) 621 WP_058001644.1 nitroreductase family protein -
  ACH6FB_RS05620 (ACH6FB_05620) - 1084423..1085028 (+) 606 WP_002869471.1 NAD(P)H-dependent oxidoreductase -
  ACH6FB_RS05625 (ACH6FB_05625) pgsA 1085153..1085689 (+) 537 WP_002869472.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACH6FB_RS05630 (ACH6FB_05630) rseP 1085686..1086792 (+) 1107 WP_002869473.1 RIP metalloprotease RseP -
  ACH6FB_RS05635 (ACH6FB_05635) - 1086785..1087651 (+) 867 WP_002886367.1 VirK family antimicrobial peptide resistance protein -
  ACH6FB_RS05640 (ACH6FB_05640) rpsF 1087738..1088115 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  ACH6FB_RS05645 (ACH6FB_05645) ssb 1088124..1088675 (+) 552 WP_002853013.1 single-stranded DNA-binding protein Machinery gene
  ACH6FB_RS05650 (ACH6FB_05650) rpsR 1088686..1088946 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  ACH6FB_RS05655 (ACH6FB_05655) lon 1089006..1091381 (-) 2376 WP_002852988.1 endopeptidase La -
  ACH6FB_RS05660 (ACH6FB_05660) - 1091398..1092045 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  ACH6FB_RS05665 (ACH6FB_05665) fliW 1092206..1092595 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  ACH6FB_RS05670 (ACH6FB_05670) proC 1092595..1093326 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  ACH6FB_RS05675 (ACH6FB_05675) ctsT 1093323..1093625 (+) 303 WP_002875928.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20710.60 Da        Isoelectric Point: 5.0431

>NTDB_id=952022 ACH6FB_RS05645 WP_002853013.1 1088124..1088675(+) (ssb) [Campylobacter jejuni strain YH030]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=952022 ACH6FB_RS05645 WP_002853013.1 1088124..1088675(+) (ssb) [Campylobacter jejuni strain YH030]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361