Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   ACH6KY_RS09835 Genome accession   NZ_CP172331
Coordinates   2018465..2019121 (+) Length   218 a.a.
NCBI ID   WP_000611336.1    Uniprot ID   -
Organism   Escherichia coli strain APEC-O117H42     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2013465..2024121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6KY_RS09800 (ACH6KY_09800) dcyD 2014344..2015330 (+) 987 WP_112934473.1 D-cysteine desulfhydrase -
  ACH6KY_RS09805 (ACH6KY_09805) tcyL 2015345..2016013 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  ACH6KY_RS09810 (ACH6KY_09810) tcyN 2016010..2016762 (+) 753 WP_001272991.1 L-cystine ABC transporter ATP-binding protein TcyN -
  ACH6KY_RS09815 (ACH6KY_09815) sdiA 2016992..2017714 (+) 723 WP_001152713.1 transcriptional regulator SdiA -
  ACH6KY_RS09820 (ACH6KY_09820) yecF 2017782..2018006 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  ACH6KY_RS09825 (ACH6KY_09825) yecU 2017993..2018169 (-) 177 WP_000590344.1 protein YecU -
  ACH6KY_RS09830 (ACH6KY_09830) - 2018207..2018323 (-) 117 Protein_1921 transcriptional regulator -
  ACH6KY_RS09835 (ACH6KY_09835) letA 2018465..2019121 (+) 657 WP_000611336.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  ACH6KY_RS09840 (ACH6KY_09840) uvrC 2019118..2020950 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  ACH6KY_RS09845 (ACH6KY_09845) pgsA 2021007..2021555 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACH6KY_RS09865 (ACH6KY_09865) - 2022252..2022992 (-) 741 WP_032236380.1 hypothetical protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23878.58 Da        Isoelectric Point: 6.6397

>NTDB_id=951879 ACH6KY_RS09835 WP_000611336.1 2018465..2019121(+) (letA) [Escherichia coli strain APEC-O117H42]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITNGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=951879 ACH6KY_RS09835 WP_000611336.1 2018465..2019121(+) (letA) [Escherichia coli strain APEC-O117H42]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCTGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAATGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486