Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Regulator
Locus tag   AABA08_RS08680 Genome accession   NZ_AP028602
Coordinates   1706486..1707106 (-) Length   206 a.a.
NCBI ID   WP_000839909.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PF2     
Function   fratricide immunity (predicted from homology)   
Competence regulation

Genomic Context

Location: 1701486..1712106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA08_RS08655 (TKY092604_16980) recA 1701863..1703029 (-) 1167 WP_001085462.1 recombinase RecA -
  AABA08_RS08660 (TKY092604_16990) cinA 1703084..1704340 (-) 1257 WP_000642704.1 competence/damage-inducible protein A Machinery gene
  AABA08_RS08665 (TKY092604_17000) brpA 1704425..1705441 (-) 1017 WP_000239278.1 biofilm formation/cell division transcriptional regulator BrpA -
  AABA08_RS08670 (TKY092604_17010) - 1705449..1705967 (-) 519 WP_000455536.1 GNAT family N-acetyltransferase -
  AABA08_RS08675 (TKY092604_17020) tsaE 1705957..1706400 (-) 444 WP_000288230.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  AABA08_RS08680 (TKY092604_17030) comM 1706486..1707106 (-) 621 WP_000839909.1 hypothetical protein Regulator
  AABA08_RS08685 (TKY092604_17040) - 1707412..1708275 (-) 864 WP_001093609.1 helix-turn-helix domain-containing protein -
  AABA08_RS08690 (TKY092604_17050) - 1708467..1708637 (+) 171 WP_001227863.1 PhrA family quorum-sensing system peptide -
  AABA08_RS08695 (TKY092604_17060) - 1709039..1709353 (+) 315 WP_000420682.1 YdcP family protein -
  AABA08_RS08700 (TKY092604_17070) - 1709369..1709755 (+) 387 WP_000985015.1 YdcP family protein -
  AABA08_RS08705 (TKY092604_17080) - 1709784..1711169 (+) 1386 WP_000813488.1 FtsK/SpoIIIE domain-containing protein -
  AABA08_RS08710 - 1711172..1711324 (+) 153 WP_000879507.1 hypothetical protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23540.66 Da        Isoelectric Point: 10.1254

>NTDB_id=95158 AABA08_RS08680 WP_000839909.1 1706486..1707106(-) (comM) [Streptococcus pneumoniae strain PF2]
MKSMRILFLLALIQISLSSCFLWKECILSFKQSTAFFIGSMVFVSGICAGVNYLYTRKQEVHSVLASKKSVKLFYSMLLL
INLLGAVLVLSDNLFIKNTLQQELVDFLLPSFFFLFGLDLLIFLPLKKYVRDFLAMLDRKKTVLVTILATLLFLRNPMTI
VSLLIYTGLGLFFAAYLVPNSVKKEVSFYGHIFRDLVLVIVTLIFF

Nucleotide


Download         Length: 621 bp        

>NTDB_id=95158 AABA08_RS08680 WP_000839909.1 1706486..1707106(-) (comM) [Streptococcus pneumoniae strain PF2]
ATGAAATCAATGAGAATCTTATTTTTGTTAGCTTTAATTCAAATCAGTTTGAGTAGCTGTTTCCTATGGAAGGAATGCAT
CTTGTCCTTTAAACAAAGTACAGCTTTTTTCATCGGAAGCATGGTTTTCGTTTCAGGAATCTGTGCTGGAGTAAATTATC
TTTATACCCGTAAGCAAGAAGTCCATAGTGTCCTAGCCAGTAAGAAGTCGGTGAAGCTTTTTTACAGTATGTTACTCTTA
ATTAATTTGTTAGGAGCTGTTCTTGTTTTGTCAGATAACTTGTTCATCAAAAATACGCTGCAGCAAGAATTAGTTGACTT
TTTATTGCCATCCTTCTTTTTCCTATTTGGGCTAGATTTGCTGATTTTTTTACCCTTGAAAAAATACGTGCGCGATTTTC
TTGCTATGCTAGACAGAAAAAAGACAGTGTTGGTGACTATTTTAGCAACACTTCTTTTCTTAAGAAATCCAATGACCATT
GTCTCACTTCTGATTTATACTGGACTGGGCTTGTTTTTTGCAGCCTATCTTGTCCCAAATTCGGTTAAGAAGGAAGTTTC
CTTTTATGGTCATATTTTCCGAGATCTTGTATTGGTCATTGTTACGCTCATTTTCTTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Streptococcus pneumoniae D39

99.515

100

0.995
  comM Streptococcus pneumoniae R6

99.515

100

0.995
  comM Streptococcus pneumoniae TIGR4

99.515

100

0.995
  comM Streptococcus mitis NCTC 12261

38.462

94.66

0.364
  comM Streptococcus mitis SK321

38.462

94.66

0.364

Multiple sequence alignment