Detailed information NTG0951441

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: ACH19Q_RS04020
• Genome accession: NZ_CP172236
• Coordinates: 852414..854702 (+)
• Length: 762 a.a.
• NCBI ID: WP_011002381.1
• Uniprot ID: Q8XWL0
• Organism: Ralstonia pseudosolanacearum strain UMN24-1
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 847414..859702

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACH19Q_RS03995 (ACH19Q_03995)	icd	848186..849436 (+)	1251	WP_016725925.1	NADP-dependent isocitrate dehydrogenase	-
ACH19Q_RS04000 (ACH19Q_04000)	-	849663..849875 (+)	213	WP_011002385.1	hypothetical protein	-
ACH19Q_RS04005 (ACH19Q_04005)	-	850064..850684 (-)	621	WP_011002384.1	DUF4126 domain-containing protein	-
ACH19Q_RS04010 (ACH19Q_04010)	-	851334..851537 (-)	204	WP_011002383.1	cold-shock protein	-
ACH19Q_RS04015 (ACH19Q_04015)	clpS	852091..852417 (+)	327	WP_011002382.1	ATP-dependent Clp protease adapter ClpS	-
ACH19Q_RS04020 (ACH19Q_04020)	clpC	852414..854702 (+)	2289	WP_011002381.1	ATP-dependent Clp protease ATP-binding subunit ClpA	Regulator
ACH19Q_RS04025 (ACH19Q_04025)	dut	854772..855218 (-)	447	WP_011002380.1	dUTP diphosphatase	-
ACH19Q_RS04030 (ACH19Q_04030)	-	855215..856267 (-)	1053	WP_011002379.1	LLM class flavin-dependent oxidoreductase	-
ACH19Q_RS04035 (ACH19Q_04035)	coaBC	856264..857469 (-)	1206	WP_011002378.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
ACH19Q_RS04040 (ACH19Q_04040)	-	857618..858193 (+)	576	WP_028853530.1	YdcF family protein	-
ACH19Q_RS04045 (ACH19Q_04045)	lspA	858233..858754 (-)	522	WP_011002376.1	signal peptidase II	-

Sequence

Protein

• Length: 762 a.a.
• Molecular weight: 83548.71 Da
• Isoelectric Point: 6.2902

>NTDB_id=951441 ACH19Q_RS04020 WP_011002381.1 852414..854702(+) (clpC) [Ralstonia pseudosolanacearum strain UMN24-1]
MIAQELEVSLHMAFVEARQARHEFITVEHLLLALLDNPTAAEVLRACAANIEDLRTHLKNFIADNTPVVPGTDEVDTQPT
LGFQRVIQRAIMHVQSTSNGKKEVTGANVLVAIFGEKDSHAVYYLQQQGVTRLDVVNFISHGIRKDQAEPAKHGDSNPEG
EAGDGKESPLEQFTQNLNALAKAGKIDPLIGREQEVERVVQVLCRRRKNNPLLVGEAGVGKTAIAEGLAWRITKGEVPDI
LARSVVYSLDMGALLAGTKYRGDFEQRLKGVLKSLKDNPNAILFIDEIHTLIGAGAASGGTLDASNLLKPALSSGALKCI
GATTFTEYRGIFEKDAALSRRFQKIDVVEPSIDQTVQILRGLKSRFEEHHGVKYAASALTAAAELSARFITDRHLPDKAI
DVIDEAGAAQRILPKSKQKKTIGKGEIEDIVSRIARVPPQSVSQDDRSKLQTLERDLKSVVFGQDPAIDALASAIKMSRA
GLGKTDKPIGSFLFSGPTGVGKTEVAKQLAFILGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAITKKPHC
VLLLDEIEKAHPDIFNILLQVMDHGSLTDNNGRKADFRNVIIVMTTNAGAETMNKATIGFTTTREQGDEMADIKRMFTPE
FRNRLDATISFRSLDEDIILRVVDKFLMQLEEQLHEKKVDAVFTEKLRRFLAKKGFDPLMGARPMQRLIQDMIRKALADE
LLFGKLVNGGKVAVDLDDADAVKLEFSENEAPPAPAQEEAEA

Nucleotide

• Length: 2289 bp

>NTDB_id=951441 ACH19Q_RS04020 WP_011002381.1 852414..854702(+) (clpC) [Ralstonia pseudosolanacearum strain UMN24-1]
ATGATCGCGCAAGAACTGGAAGTCAGCCTGCACATGGCGTTTGTCGAAGCCCGCCAGGCTCGCCACGAATTCATTACGGT
GGAGCATCTGCTGCTTGCGCTGCTGGACAATCCGACGGCGGCGGAAGTGCTGCGCGCCTGCGCCGCCAACATCGAAGACC
TCCGCACGCACCTGAAGAACTTCATCGCCGACAACACGCCGGTGGTGCCGGGCACGGACGAGGTGGACACGCAGCCGACG
CTGGGCTTCCAGCGCGTGATCCAGCGCGCCATCATGCACGTGCAGTCGACCTCCAACGGCAAGAAGGAGGTGACGGGCGC
CAATGTGCTGGTGGCCATCTTCGGCGAGAAGGACTCCCACGCGGTCTACTACCTGCAGCAGCAGGGCGTGACGCGGCTGG
ACGTCGTCAACTTCATCAGCCACGGCATCCGCAAGGACCAAGCCGAGCCGGCTAAGCACGGCGACAGCAACCCGGAGGGC
GAAGCCGGCGACGGCAAGGAAAGCCCGCTGGAGCAGTTCACCCAGAACCTGAACGCGCTGGCCAAGGCCGGCAAGATCGA
TCCGCTGATCGGCCGCGAGCAGGAAGTCGAGCGCGTGGTGCAGGTGCTGTGCCGTCGCCGCAAGAACAATCCGCTGCTGG
TGGGCGAGGCGGGCGTCGGCAAGACGGCGATCGCCGAAGGGCTGGCATGGCGCATCACCAAGGGCGAGGTGCCGGACATC
CTGGCCCGGTCCGTGGTGTATTCGCTCGACATGGGCGCGCTGCTGGCCGGCACCAAGTATCGTGGCGACTTCGAGCAGCG
GCTCAAGGGCGTGCTGAAGTCGCTCAAGGACAACCCGAACGCGATCCTGTTCATCGACGAAATCCATACGCTGATCGGCG
CCGGCGCCGCATCGGGCGGCACGCTGGACGCGAGCAACCTGCTCAAGCCGGCGCTGTCGTCGGGCGCGCTCAAGTGCATC
GGCGCGACCACCTTCACCGAATACCGGGGCATCTTCGAGAAGGACGCGGCGCTGTCGCGGCGCTTCCAGAAGATCGACGT
GGTGGAGCCGTCCATTGACCAGACCGTGCAGATCCTGCGTGGGCTGAAGTCGCGGTTCGAGGAGCACCACGGCGTCAAGT
ACGCGGCGTCCGCCCTGACGGCGGCGGCTGAGCTGTCGGCGCGCTTCATTACTGACCGCCACCTGCCGGACAAGGCGATC
GACGTGATCGACGAGGCCGGCGCGGCGCAGCGCATCCTGCCGAAGTCGAAGCAGAAGAAGACCATCGGCAAGGGCGAGAT
TGAAGACATCGTGTCGCGCATCGCCCGTGTCCCGCCGCAAAGCGTGTCGCAGGACGACCGCAGCAAGCTGCAGACGCTGG
AGCGCGATCTGAAGTCGGTCGTGTTCGGGCAGGACCCGGCCATCGACGCGCTGGCTTCGGCCATCAAGATGTCGCGTGCC
GGGCTGGGCAAGACCGACAAGCCGATCGGCTCGTTCCTGTTCTCCGGCCCGACCGGCGTCGGCAAGACCGAGGTCGCCAA
GCAGCTGGCGTTCATCCTGGGCATCGAGCTGATCCGCTTCGACATGTCGGAGTACATGGAACGCCATGCGGTGAGCCGGC
TGATCGGCGCGCCTCCGGGCTACGTCGGGTTCGACCAGGGCGGCCTGCTGACCGAGGCCATCACCAAGAAGCCGCACTGC
GTGCTGCTGCTGGACGAAATCGAGAAGGCCCACCCGGACATCTTCAACATCCTGCTGCAGGTGATGGACCACGGCTCGCT
GACGGACAACAACGGCCGCAAGGCGGATTTCCGCAACGTGATCATCGTCATGACGACCAACGCGGGCGCCGAGACGATGA
ACAAGGCCACCATCGGCTTCACCACGACGCGCGAGCAGGGCGACGAGATGGCCGATATCAAGCGGATGTTCACGCCGGAG
TTCCGCAACCGCCTGGATGCGACCATCAGCTTCCGCTCGCTGGACGAGGACATCATCCTGCGCGTGGTCGACAAGTTCCT
GATGCAGCTGGAAGAGCAGCTGCACGAGAAGAAGGTGGACGCCGTCTTCACCGAGAAGCTGCGCCGCTTCCTGGCGAAGA
AGGGCTTCGACCCGCTGATGGGCGCGCGGCCGATGCAGCGCCTGATCCAGGACATGATCCGCAAGGCGCTGGCCGACGAG
CTGCTGTTCGGCAAGCTGGTCAACGGCGGCAAGGTGGCGGTGGACCTGGATGATGCCGACGCGGTCAAGCTGGAGTTCTC
CGAGAACGAGGCGCCGCCCGCGCCCGCGCAGGAAGAGGCGGAAGCCTGA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (212-324)

• AAA domain (Cdc48 subfamily) (AAA_2) (487-647)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (654-734)

• AAA lid domain (AAA_lid_9) (351-454)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (13-62)

3D structure

• AlphaFold DB: Q8XWL0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	40.718	100	0.432
clpC	Streptococcus thermophilus LMG 18311	38.095	100	0.409
clpA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	42.582	95.538	0.407
clpC	Streptococcus thermophilus LMD-9	43.614	84.252	0.367