Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACH19Q_RS03015 Genome accession   NZ_CP172236
Coordinates   652617..654809 (+) Length   730 a.a.
NCBI ID   WP_200763199.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain UMN24-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 647617..659809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH19Q_RS02995 (ACH19Q_02995) secD 647864..649744 (-) 1881 WP_011002622.1 protein translocase subunit SecD -
  ACH19Q_RS03000 (ACH19Q_03000) yajC 649866..650195 (-) 330 WP_011002621.1 preprotein translocase subunit YajC -
  ACH19Q_RS03005 (ACH19Q_03005) tgt 650307..651458 (-) 1152 WP_016723717.1 tRNA guanosine(34) transglycosylase Tgt -
  ACH19Q_RS03010 (ACH19Q_03010) queA 651452..652540 (-) 1089 WP_089190634.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  ACH19Q_RS03015 (ACH19Q_03015) recG 652617..654809 (+) 2193 WP_200763199.1 ATP-dependent DNA helicase RecG Machinery gene
  ACH19Q_RS03020 (ACH19Q_03020) - 654828..655031 (-) 204 WP_058908292.1 GDCCVxC domain-containing (seleno)protein -
  ACH19Q_RS03025 (ACH19Q_03025) - 655043..655483 (-) 441 WP_011002617.1 hypothetical protein -
  ACH19Q_RS03030 (ACH19Q_03030) - 655707..655880 (-) 174 WP_162903483.1 hypothetical protein -
  ACH19Q_RS03035 (ACH19Q_03035) - 656024..657154 (-) 1131 WP_197369094.1 DSD1 family PLP-dependent enzyme -
  ACH19Q_RS03040 (ACH19Q_03040) - 657296..658237 (+) 942 WP_043897937.1 LysR family transcriptional regulator -
  ACH19Q_RS03045 (ACH19Q_03045) - 658428..659651 (-) 1224 WP_197369093.1 diaminopropionate ammonia-lyase -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 79201.33 Da        Isoelectric Point: 9.6326

>NTDB_id=951435 ACH19Q_RS03015 WP_200763199.1 652617..654809(+) (recG) [Ralstonia pseudosolanacearum strain UMN24-1]
MPARARSATAAVPAPDADTAPAAGPRRAPAAKPADKPAAKTARPADKLAKLGLRRDVDLVLHLPMRYEDETALLTIAEAV
ARANTGWAAQVDGVVTRNEVAFRPRRQLVVHIADDSGELVLRFLNFYGSQVKQMAEGARLRVRGEVRGGFFGAEMVHPAV
RAVTPDEPLPDRLTPVYPSTAGVAQAYLRKAILNALGRTPLPETLPDSLLRGPLAPLKLMAPAEAVRLLHQPTPDVDEHS
LVERTHPAWLRIKFDELLAQQLSLKRAQAARRTRSAPVLRAGGADGLLARFLAALPFKLTGAQARVWEEIRADLARPYPM
QRLLQGDVGSGKTVIAALAACQAIDAGRQAALMAPTELLAEQHYRKLSAWLAPLGVDIVWLAGSLKRKQKDEAAARVAAG
TAQLVIGTHALIQDTVTFARLGLAVVDEQHRFGVAQRLALRGKAGGTDTPIAETAQLVPHQLMMSATPIPRTLAMTYYAD
LAVSAIDELPPGRTPVVTRLVNDARRDEVIERIHAAAREGRQVYWVCPLIEESEALQLQTAVETFETLSQSLAGLKVGLV
HGRLPSTDKAAVMSAFAGGELHVLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILLYQAPLS
PTAKQRLQTMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLNHDAWMVEFAQGAAEQMLARFPDAVEAHLKRW
LGEREHYLRV

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=951435 ACH19Q_RS03015 WP_200763199.1 652617..654809(+) (recG) [Ralstonia pseudosolanacearum strain UMN24-1]
GTGCCCGCTCGCGCCCGCTCCGCCACCGCCGCCGTTCCCGCGCCCGATGCCGACACGGCGCCGGCCGCCGGCCCCAGGCG
CGCGCCCGCGGCGAAGCCCGCGGACAAGCCGGCCGCCAAGACCGCCCGCCCCGCCGACAAGCTGGCCAAGCTCGGCCTGC
GCCGCGACGTCGATCTCGTGCTGCACCTGCCGATGCGCTACGAGGACGAAACCGCGCTGCTGACCATCGCCGAGGCCGTC
GCCCGCGCCAATACCGGCTGGGCCGCGCAGGTGGATGGGGTGGTGACGCGCAACGAAGTGGCGTTCCGGCCCCGCCGGCA
ACTGGTGGTGCACATCGCTGACGATTCCGGCGAGCTGGTGCTGCGCTTTCTCAACTTCTACGGCAGCCAGGTCAAGCAGA
TGGCCGAGGGTGCGCGCCTGCGCGTGCGCGGCGAGGTGCGCGGCGGCTTCTTCGGCGCGGAGATGGTGCATCCGGCGGTG
CGCGCCGTGACGCCGGACGAGCCGCTGCCCGACCGCCTGACCCCGGTCTATCCCAGCACCGCCGGCGTGGCGCAGGCGTA
TCTGCGCAAGGCCATCCTGAATGCGCTCGGCCGCACGCCGCTGCCCGAGACCCTGCCGGACAGCCTGTTGCGCGGGCCGC
TGGCGCCGCTCAAGCTGATGGCGCCCGCCGAGGCCGTCCGCCTGTTGCACCAGCCCACGCCCGACGTGGACGAGCACAGC
CTGGTCGAACGCACCCACCCGGCCTGGCTGCGCATCAAGTTCGACGAACTGCTGGCGCAGCAACTGTCGCTCAAGCGCGC
CCAGGCCGCGCGCCGCACGCGCAGCGCGCCGGTGCTGCGGGCCGGCGGCGCAGACGGGCTGCTCGCGCGCTTCCTGGCGG
CGCTGCCCTTCAAGCTGACCGGCGCGCAGGCCCGCGTGTGGGAGGAGATCCGCGCGGACCTCGCCCGGCCGTACCCGATG
CAGCGGCTGCTGCAGGGCGACGTGGGCAGCGGCAAGACCGTCATCGCCGCGCTGGCCGCGTGCCAGGCCATCGACGCCGG
CCGGCAGGCCGCGCTGATGGCGCCGACCGAACTGCTGGCCGAGCAGCACTACCGCAAGCTGTCGGCCTGGCTCGCGCCGC
TGGGCGTGGACATCGTCTGGCTGGCCGGCAGCCTCAAGCGCAAGCAGAAGGACGAGGCCGCTGCGCGCGTGGCCGCCGGC
ACCGCGCAGCTGGTGATCGGCACCCATGCGCTGATCCAGGACACCGTGACCTTCGCCCGCCTGGGGCTGGCCGTGGTGGA
CGAGCAGCACCGCTTCGGCGTGGCGCAGCGGCTGGCGCTGCGCGGCAAGGCCGGCGGCACCGACACGCCCATCGCCGAGA
CCGCGCAGCTGGTGCCGCACCAGCTGATGATGTCGGCCACGCCGATCCCGCGCACGCTGGCGATGACGTACTACGCCGAC
CTCGCCGTCTCGGCCATCGACGAGCTGCCGCCCGGCCGCACGCCGGTGGTCACGCGCCTGGTCAACGATGCGCGCCGCGA
CGAGGTGATCGAACGCATCCACGCCGCCGCGCGCGAGGGGCGGCAGGTCTACTGGGTCTGTCCCCTGATCGAAGAGAGCG
AGGCGTTGCAGCTGCAGACTGCCGTCGAGACGTTCGAGACGCTGTCGCAGAGCCTGGCCGGCCTCAAGGTCGGGCTGGTG
CACGGGCGCCTGCCGTCCACCGACAAGGCCGCGGTGATGAGCGCCTTCGCCGGCGGCGAGCTGCACGTGCTGGTGGCGAC
CACCGTGATCGAAGTGGGCGTCGACGTGCCCAACGCCTCGCTGATGGTGATCGAGCACGCCGAGCGCTTCGGGCTGGCGC
AGCTCCATCAGCTGCGCGGACGGGTCGGGCGCGGCACGGCCGAATCGGTCTGCATCCTGCTGTACCAGGCGCCCCTGTCG
CCGACGGCCAAACAGCGCCTGCAGACCATGCGCGAGACCACCGACGGCTTCGAGATCGCGCGGCGCGACCTGGATATCCG
CGGCCCCGGCGAATTCCTCGGCGCGCGGCAATCGGGCGAGGCCATGTTGCGCTTTGCCGACCTGAACCACGATGCGTGGA
TGGTCGAGTTCGCCCAGGGCGCGGCCGAGCAGATGCTGGCGCGCTTTCCCGACGCGGTGGAGGCGCACCTCAAGCGCTGG
CTCGGCGAGCGCGAGCACTACCTGCGCGTCTAG

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(47-194)

DEAD/DEAH box helicase (DEAD)

(320-472)

Helicase conserved C-terminal domain (Helicase_C)

(515-625)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(653-713)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

57.994

94.247

0.547
  recG/mmsA Streptococcus pneumoniae R6

41.053

91.096

0.374
  recG/mmsA Streptococcus pneumoniae R36A

41.053

91.096

0.374