Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   WHO18_RS01980 Genome accession   NZ_CP148128
Coordinates   371327..371725 (-) Length   132 a.a.
NCBI ID   WP_003246342.1    Uniprot ID   A0AAE2SGH7
Organism   Bacillus subtilis isolate FELIX_MS620     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 366327..376725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO18_RS01950 yckA 366903..367583 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  WHO18_RS01955 yckB 367593..368456 (-) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  WHO18_RS01960 - 368618..368815 (+) 198 WP_119122841.1 hypothetical protein -
  WHO18_RS01965 yckC 368834..369289 (+) 456 WP_003246356.1 RDD family protein -
  WHO18_RS01970 yckD 369371..369703 (+) 333 WP_003246247.1 YckD family protein -
  WHO18_RS01975 bglC 369857..371290 (+) 1434 WP_003246242.1 6-phospho-beta-glucosidase -
  WHO18_RS01980 nin/comJ 371327..371725 (-) 399 WP_003246342.1 DNA-entry nuclease inhibitor Regulator
  WHO18_RS01985 nucA/comI 371752..372201 (-) 450 WP_003246436.1 DNA-entry nuclease Machinery gene
  WHO18_RS01990 tlpC 372369..374090 (-) 1722 WP_003246498.1 methyl-accepting chemotaxis protein TlpC -
  WHO18_RS01995 hxlB 374201..374758 (-) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  WHO18_RS02000 hxlA 374764..375396 (-) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  WHO18_RS02005 hxlR 375629..375991 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14996.95 Da        Isoelectric Point: 4.8991

>NTDB_id=951407 WHO18_RS01980 WP_003246342.1 371327..371725(-) (nin/comJ) [Bacillus subtilis isolate FELIX_MS620]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILFRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=951407 WHO18_RS01980 WP_003246342.1 371327..371725(-) (nin/comJ) [Bacillus subtilis isolate FELIX_MS620]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTTCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

100

100

1