Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   ACHP5D_RS21180 Genome accession   NZ_CP172217
Coordinates   4212469..4213677 (-) Length   402 a.a.
NCBI ID   WP_001161846.1    Uniprot ID   -
Organism   Escherichia coli strain GF4     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 4207469..4218677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHP5D_RS21170 (ACHP5D_21185) - 4207774..4211283 (+) 3510 WP_000836184.1 hypothetical protein -
  ACHP5D_RS21175 (ACHP5D_21190) - 4211402..4212391 (+) 990 WP_000028052.1 hypothetical protein -
  ACHP5D_RS21180 (ACHP5D_21195) kpsS 4212469..4213677 (-) 1209 WP_001161846.1 capsule biosynthesis protein Regulator
  ACHP5D_RS21185 (ACHP5D_21200) - 4213712..4215739 (-) 2028 WP_000579518.1 capsular polysaccharide biosynthesis protein -
  ACHP5D_RS21190 (ACHP5D_21205) kdsB 4215736..4216476 (-) 741 WP_000030761.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACHP5D_RS21195 (ACHP5D_21210) - 4216486..4218162 (-) 1677 WP_141094375.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 47943.54 Da        Isoelectric Point: 10.2401

>NTDB_id=951408 ACHP5D_RS21180 WP_001161846.1 4212469..4213677(-) (kpsS) [Escherichia coli strain GF4]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGLRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGDRVRKQIKVK
KL

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=951408 ACHP5D_RS21180 WP_001161846.1 4212469..4213677(-) (kpsS) [Escherichia coli strain GF4]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCCTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGTTTTGGTGACTGTCGCCCATTGCATAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGCTCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATAACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCACCGAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGGGAACGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTGTTACGCCACGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATATCTGCGCTGATTCACAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGTTTATTATGGGGATAGAGTAAGAAAACAAATAAAAGTAAAA
AAATTATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.642

97.264

0.386