Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   WHO38_RS17200 Genome accession   NZ_CP148124
Coordinates   3251537..3252181 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis isolate FELIX_MS521     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3246537..3257181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO38_RS17165 mrpB 3247729..3248160 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  WHO38_RS17170 mrpC 3248160..3248501 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  WHO38_RS17175 mrpD 3248494..3249975 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  WHO38_RS17180 mrpE 3249981..3250457 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  WHO38_RS17185 mrpF 3250457..3250741 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  WHO38_RS17190 mnhG 3250725..3251099 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  WHO38_RS17195 yuxO 3251138..3251518 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  WHO38_RS17200 comA 3251537..3252181 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  WHO38_RS17205 comP 3252262..3254571 (-) 2310 WP_277723628.1 two-component system sensor histidine kinase ComP Regulator
  WHO38_RS17210 comX 3254586..3254753 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  WHO38_RS17215 comQ 3254741..3255640 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  WHO38_RS17220 degQ 3255825..3255965 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  WHO38_RS17225 - 3256187..3256312 (+) 126 WP_003228793.1 hypothetical protein -
  WHO38_RS17230 - 3256426..3256794 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=951336 WHO38_RS17200 WP_003220716.1 3251537..3252181(-) (comA) [Bacillus subtilis isolate FELIX_MS521]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=951336 WHO38_RS17200 WP_003220716.1 3251537..3252181(-) (comA) [Bacillus subtilis isolate FELIX_MS521]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1