Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AABA08_RS04715 Genome accession   NZ_AP028602
Coordinates   937143..938810 (+) Length   555 a.a.
NCBI ID   WP_000923573.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PF2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 932143..943810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA08_RS04680 (TKY092604_09240) - 932326..932628 (+) 303 WP_000985089.1 bacteriocin immunity protein -
  AABA08_RS04685 (TKY092604_09250) udk 932736..933374 (+) 639 WP_001181378.1 uridine kinase -
  AABA08_RS04690 (TKY092604_09260) xseA 933502..934842 (+) 1341 WP_000417457.1 exodeoxyribonuclease VII large subunit -
  AABA08_RS04695 (TKY092604_09270) - 934820..935032 (+) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  AABA08_RS04700 (TKY092604_09280) - 935029..935904 (+) 876 WP_000743820.1 polyprenyl synthetase family protein -
  AABA08_RS04705 (TKY092604_09290) - 935897..936712 (+) 816 WP_001041073.1 TlyA family RNA methyltransferase -
  AABA08_RS04710 (TKY092604_09300) - 936705..937136 (+) 432 WP_001034412.1 arginine repressor -
  AABA08_RS04715 (TKY092604_09310) recN 937143..938810 (+) 1668 WP_000923573.1 DNA repair protein RecN Machinery gene
  AABA08_RS04720 (TKY092604_09320) - 938812..939540 (+) 729 WP_000133331.1 metallophosphoesterase family protein -
  AABA08_RS04725 (TKY092604_09330) lepA 939619..941442 (+) 1824 WP_001047216.1 translation elongation factor 4 -
  AABA08_RS04730 (TKY092604_09340) - 941902..942378 (+) 477 WP_000242182.1 PTS sugar transporter subunit IIA -
  AABA08_RS04735 (TKY092604_09350) - 942416..942718 (+) 303 WP_000590580.1 PTS sugar transporter subunit IIB -
  AABA08_RS04740 - 942726..943529 (+) 804 Protein_938 IS5 family transposase -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62791.28 Da        Isoelectric Point: 4.7067

>NTDB_id=95115 AABA08_RS04715 WP_000923573.1 937143..938810(+) (recN) [Streptococcus pneumoniae strain PF2]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNKMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=95115 AABA08_RS04715 WP_000923573.1 937143..938810(+) (recN) [Streptococcus pneumoniae strain PF2]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGCCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTGATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATAAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44

Multiple sequence alignment