Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   WHO62_RS19140 Genome accession   NZ_CP148114
Coordinates   3640132..3640854 (-) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis isolate FELIX_MS506     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3635132..3645854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO62_RS19105 fliW 3635271..3635702 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  WHO62_RS19110 yviE 3635723..3636298 (-) 576 WP_003243053.1 DUF6470 family protein -
  WHO62_RS19115 flgL 3636345..3637241 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  WHO62_RS19120 flgK 3637252..3638775 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  WHO62_RS19125 flgN 3638794..3639276 (-) 483 WP_003227999.1 flagellar protein FlgN -
  WHO62_RS19130 flgM 3639292..3639558 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  WHO62_RS19135 yvyF 3639639..3640058 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  WHO62_RS19140 comFC 3640132..3640854 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  WHO62_RS19145 comFB 3640818..3641114 (-) 297 WP_003227989.1 late competence protein ComFB -
  WHO62_RS19150 comFA 3641174..3642565 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  WHO62_RS19155 fakBA 3642671..3643516 (-) 846 WP_003244125.1 DegV family protein -
  WHO62_RS19160 degU 3643614..3644303 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WHO62_RS19165 degS 3644386..3645543 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=950955 WHO62_RS19140 WP_003227991.1 3640132..3640854(-) (comFC) [Bacillus subtilis isolate FELIX_MS506]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=950955 WHO62_RS19140 WP_003227991.1 3640132..3640854(-) (comFC) [Bacillus subtilis isolate FELIX_MS506]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1