Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ACHP5I_RS06810 Genome accession   NZ_CP172185
Coordinates   1392072..1393064 (+) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain GF60     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1387072..1398064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHP5I_RS06780 (ACHP5I_06780) ispD 1387133..1387843 (+) 711 WP_000246154.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACHP5I_RS06785 (ACHP5I_06785) ispF 1387843..1388322 (+) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACHP5I_RS06790 (ACHP5I_06790) truD 1388319..1389368 (+) 1050 WP_000568924.1 tRNA pseudouridine(13) synthase TruD -
  ACHP5I_RS06795 (ACHP5I_06795) surE 1389349..1390110 (+) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  ACHP5I_RS06800 (ACHP5I_06800) pcm 1390104..1390730 (+) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  ACHP5I_RS06805 (ACHP5I_06805) nlpD 1390915..1392009 (+) 1095 WP_306174120.1 murein hydrolase activator NlpD -
  ACHP5I_RS06810 (ACHP5I_06810) rpoS 1392072..1393064 (+) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  ACHP5I_RS06815 (ACHP5I_06815) - 1393185..1393592 (-) 408 WP_096990055.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACHP5I_RS06820 (ACHP5I_06820) - 1393739..1394332 (+) 594 WP_001237176.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  ACHP5I_RS06825 (ACHP5I_06825) - 1394332..1395759 (+) 1428 WP_000863186.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  ACHP5I_RS06830 (ACHP5I_06830) - 1395770..1396006 (+) 237 Protein_1348 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  ACHP5I_RS06835 (ACHP5I_06835) pphB 1396048..1396704 (-) 657 WP_096990056.1 protein-serine/threonine phosphatase -
  ACHP5I_RS06840 (ACHP5I_06840) - 1396729..1397592 (-) 864 WP_001223109.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=950956 ACHP5I_RS06810 WP_000081550.1 1392072..1393064(+) (rpoS) [Escherichia coli strain GF60]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=950956 ACHP5I_RS06810 WP_000081550.1 1392072..1393064(+) (rpoS) [Escherichia coli strain GF60]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGACGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
GAAAGCCTTAGTTGAAGAGGAACCCAGTGATAACGATTTGGCTGAAGAGGAGCTGTTATCGCAAGGGGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCGCCACTGTTAACGGCCGAAGAAGAAGTTTATTTCGCG
CGTCGCGCACTGCGTGGAGATGTCGCTTCACGTCGCCGGATGATTGAAAGTAACCTGCGTCTGGTCGTGAAGATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGCTGTTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATCCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715