Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   WHO62_RS17220 Genome accession   NZ_CP148114
Coordinates   3256099..3256239 (-) Length   46 a.a.
NCBI ID   WP_003220708.1    Uniprot ID   G4P060
Organism   Bacillus subtilis isolate FELIX_MS506     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3251099..3261239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO62_RS17195 yuxO 3251412..3251792 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  WHO62_RS17200 comA 3251811..3252455 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  WHO62_RS17205 comP 3252536..3254845 (-) 2310 WP_003242894.1 two-component system sensor histidine kinase ComP Regulator
  WHO62_RS17210 comX 3254860..3255027 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  WHO62_RS17215 comQ 3255015..3255914 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  WHO62_RS17220 degQ 3256099..3256239 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  WHO62_RS17225 - 3256461..3256586 (+) 126 WP_003228793.1 hypothetical protein -
  WHO62_RS17230 - 3256700..3257068 (+) 369 WP_003243784.1 hypothetical protein -
  WHO62_RS17235 pdeH 3257044..3258273 (-) 1230 WP_003243525.1 cyclic di-GMP phosphodiesterase -
  WHO62_RS17240 pncB 3258410..3259882 (-) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  WHO62_RS17245 pncA 3259898..3260449 (-) 552 WP_003243099.1 isochorismatase family cysteine hydrolase -
  WHO62_RS17250 yueI 3260546..3260944 (-) 399 WP_003242987.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5546.44 Da        Isoelectric Point: 6.2559

>NTDB_id=950952 WHO62_RS17220 WP_003220708.1 3256099..3256239(-) (degQ) [Bacillus subtilis isolate FELIX_MS506]
MEKKLEEVKQLLFRLELDIKETTDSLRNINKSIDQLDKYNYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=950952 WHO62_RS17220 WP_003220708.1 3256099..3256239(-) (degQ) [Bacillus subtilis isolate FELIX_MS506]
ATGGAAAAGAAACTTGAAGAAGTAAAACAATTGTTATTCCGACTCGAACTTGATATTAAAGAAACGACAGATTCATTACG
AAACATTAACAAAAGCATTGATCAACTCGATAAATACAATTATGCAATGAAAATTTCGTGA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P060

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

100

100

1