Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   WHO49_RS19140 Genome accession   NZ_CP148110
Coordinates   3640357..3641079 (-) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis isolate FELIX_MS499     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3635357..3646079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO49_RS19105 fliW 3635496..3635927 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  WHO49_RS19110 yviE 3635948..3636523 (-) 576 WP_003243053.1 DUF6470 family protein -
  WHO49_RS19115 flgL 3636570..3637466 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  WHO49_RS19120 flgK 3637477..3639000 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  WHO49_RS19125 flgN 3639019..3639501 (-) 483 WP_003227999.1 flagellar protein FlgN -
  WHO49_RS19130 flgM 3639517..3639783 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  WHO49_RS19135 yvyF 3639864..3640283 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  WHO49_RS19140 comFC 3640357..3641079 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  WHO49_RS19145 comFB 3641043..3641339 (-) 297 WP_003227989.1 late competence protein ComFB -
  WHO49_RS19150 comFA 3641399..3642790 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  WHO49_RS19155 fakBA 3642896..3643741 (-) 846 WP_003244125.1 DegV family protein -
  WHO49_RS19160 degU 3643839..3644528 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WHO49_RS19165 degS 3644611..3645768 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=950783 WHO49_RS19140 WP_003227991.1 3640357..3641079(-) (comFC) [Bacillus subtilis isolate FELIX_MS499]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=950783 WHO49_RS19140 WP_003227991.1 3640357..3641079(-) (comFC) [Bacillus subtilis isolate FELIX_MS499]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1