Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   WHO69_RS12040 Genome accession   NZ_CP148108
Coordinates   2645343..2645957 (+) Length   204 a.a.
NCBI ID   WP_020333941.1    Uniprot ID   A0AAN0Y4A1
Organism   Vibrio natriegens isolate FELIX_MS472     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2640343..2650957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO69_RS12020 - 2640570..2641481 (-) 912 WP_014232939.1 ABC transporter ATP-binding protein -
  WHO69_RS12025 - 2641788..2643458 (-) 1671 WP_014232940.1 SulP family inorganic anion transporter -
  WHO69_RS12030 can 2643738..2644406 (+) 669 WP_014232941.1 carbonate dehydratase -
  WHO69_RS12035 hpt 2644495..2645025 (-) 531 WP_014232942.1 hypoxanthine phosphoribosyltransferase -
  WHO69_RS12040 opaR 2645343..2645957 (+) 615 WP_020333941.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  WHO69_RS12045 lpdA 2646082..2647509 (-) 1428 WP_014232944.1 dihydrolipoyl dehydrogenase -
  WHO69_RS12050 aceF 2647776..2649665 (-) 1890 WP_020333942.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23655.95 Da        Isoelectric Point: 6.3780

>NTDB_id=950683 WHO69_RS12040 WP_020333941.1 2645343..2645957(+) (opaR) [Vibrio natriegens isolate FELIX_MS472]
MDSIAKRARTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARDNIANITSAMIELVNQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEICNTHQPE
HLTNLFHGICYSLFVQANRFKGEDELKNLVSSYLDMLCIYDRNQ

Nucleotide


Download         Length: 615 bp        

>NTDB_id=950683 WHO69_RS12040 WP_020333941.1 2645343..2645957(+) (opaR) [Vibrio natriegens isolate FELIX_MS472]
ATGGACTCAATTGCAAAGAGAGCCCGTACTAGGCTTTCCCCTATTAAGCGTAAACAACAACTCATGGAAATCGCGTTGGA
AGTATTTGCGCGTCGCGGTATTGGCCGCGGTGGTCATGCGGATATCGCTGAAATCGCACAGGTTTCTGTTGCTACCGTTT
TTAACTACTTCCCAACTCGCGAAGATCTCGTTGATGAAGTGTTGAACCACGTTGTACGTCAGTTCTCGAACTTCCTTTCA
GATAACATCGATTTAGACCTACACGCTCGTGACAATATTGCGAATATTACCAGCGCAATGATTGAGTTAGTCAATCAAGA
TTGCCACTGGCTGAAAGTATGGTTTGAGTGGAGCGCATCGACACGCGACGAAGTTTGGCCACTATTCGTGTCAACCAACC
GCACCAACCAGCTGTTGGTACAGAACATGTTTATCAAAGCAATTGAGCGTGGTGAAATCTGTAACACGCATCAACCAGAA
CATTTGACTAACTTGTTCCACGGCATTTGCTACTCACTGTTTGTACAAGCAAACCGTTTTAAGGGTGAAGATGAGCTGAA
AAACCTCGTAAGTTCATACCTTGATATGCTTTGTATTTACGATCGCAATCAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

92.079

99.02

0.912
  hapR Vibrio cholerae C6706

71.717

97.059

0.696
  hapR Vibrio cholerae strain A1552

71.717

97.059

0.696