Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   WHL98_RS20235 Genome accession   NZ_CP148104
Coordinates   3847983..3848102 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS438     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3842983..3853102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL98_RS20210 albG 3843147..3843848 (+) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  WHL98_RS20215 ywhL 3843854..3845230 (-) 1377 WP_003244415.1 YncE family protein -
  WHL98_RS20220 ywhK 3845269..3846624 (-) 1356 WP_003227552.1 YncE family protein -
  WHL98_RS20225 - 3846621..3846851 (-) 231 WP_009968328.1 hypothetical protein -
  WHL98_RS20230 rapF 3846854..3847999 (+) 1146 WP_003227549.1 response regulator aspartate phosphatase RapF Regulator
  WHL98_RS20235 phrF 3847983..3848102 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  WHL98_RS20240 ywhH 3848201..3848674 (+) 474 WP_003227547.1 YbaK/EbsC family protein -
  WHL98_RS20245 speB 3848706..3849578 (-) 873 WP_003227545.1 agmatinase -
  WHL98_RS20250 speE 3849639..3850469 (-) 831 WP_003227543.1 spermidine synthase -
  WHL98_RS20255 pbpG 3850671..3852746 (+) 2076 WP_003227540.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=950638 WHL98_RS20235 WP_009968329.1 3847983..3848102(+) (phrF) [Bacillus subtilis subsp. subtilis isolate FELIX_MS438]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=950638 WHL98_RS20235 WP_009968329.1 3847983..3848102(+) (phrF) [Bacillus subtilis subsp. subtilis isolate FELIX_MS438]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487