Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   WHL98_RS01995 Genome accession   NZ_CP148104
Coordinates   373015..373464 (-) Length   149 a.a.
NCBI ID   WP_003246436.1    Uniprot ID   A0AAE2SFQ0
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS438     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 368015..378464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL98_RS01960 yckA 368166..368846 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  WHL98_RS01965 yckB 368856..369719 (-) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  WHL98_RS01970 - 369881..370078 (+) 198 WP_119122841.1 hypothetical protein -
  WHL98_RS01975 yckC 370097..370552 (+) 456 WP_003246356.1 RDD family protein -
  WHL98_RS01980 yckD 370634..370966 (+) 333 WP_003246247.1 YckD family protein -
  WHL98_RS01985 bglC 371120..372553 (+) 1434 WP_003246242.1 6-phospho-beta-glucosidase -
  WHL98_RS01990 nin/comJ 372590..372988 (-) 399 WP_003246342.1 DNA-entry nuclease inhibitor Regulator
  WHL98_RS01995 nucA/comI 373015..373464 (-) 450 WP_003246436.1 DNA-entry nuclease Machinery gene
  WHL98_RS02000 tlpC 373632..375353 (-) 1722 WP_003246498.1 methyl-accepting chemotaxis protein TlpC -
  WHL98_RS02005 hxlB 375464..376021 (-) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  WHL98_RS02010 hxlA 376027..376659 (-) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  WHL98_RS02015 hxlR 376892..377254 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16486.48 Da        Isoelectric Point: 4.6274

>NTDB_id=950563 WHL98_RS01995 WP_003246436.1 373015..373464(-) (nucA/comI) [Bacillus subtilis subsp. subtilis isolate FELIX_MS438]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETMAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHRLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=950563 WHL98_RS01995 WP_003246436.1 373015..373464(-) (nucA/comI) [Bacillus subtilis subsp. subtilis isolate FELIX_MS438]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATGGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAAGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
GGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

100

100

1