Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   WHL98_RS01990 Genome accession   NZ_CP148104
Coordinates   372590..372988 (-) Length   132 a.a.
NCBI ID   WP_003246342.1    Uniprot ID   A0AAE2SGH7
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS438     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 367590..377988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL98_RS01960 yckA 368166..368846 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  WHL98_RS01965 yckB 368856..369719 (-) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  WHL98_RS01970 - 369881..370078 (+) 198 WP_119122841.1 hypothetical protein -
  WHL98_RS01975 yckC 370097..370552 (+) 456 WP_003246356.1 RDD family protein -
  WHL98_RS01980 yckD 370634..370966 (+) 333 WP_003246247.1 YckD family protein -
  WHL98_RS01985 bglC 371120..372553 (+) 1434 WP_003246242.1 6-phospho-beta-glucosidase -
  WHL98_RS01990 nin/comJ 372590..372988 (-) 399 WP_003246342.1 DNA-entry nuclease inhibitor Regulator
  WHL98_RS01995 nucA/comI 373015..373464 (-) 450 WP_003246436.1 DNA-entry nuclease Machinery gene
  WHL98_RS02000 tlpC 373632..375353 (-) 1722 WP_003246498.1 methyl-accepting chemotaxis protein TlpC -
  WHL98_RS02005 hxlB 375464..376021 (-) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  WHL98_RS02010 hxlA 376027..376659 (-) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  WHL98_RS02015 hxlR 376892..377254 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14996.95 Da        Isoelectric Point: 4.8991

>NTDB_id=950562 WHL98_RS01990 WP_003246342.1 372590..372988(-) (nin/comJ) [Bacillus subtilis subsp. subtilis isolate FELIX_MS438]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILFRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=950562 WHL98_RS01990 WP_003246342.1 372590..372988(-) (nin/comJ) [Bacillus subtilis subsp. subtilis isolate FELIX_MS438]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTTCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

100

100

1