Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   WHL49_RS19065 Genome accession   NZ_CP148103
Coordinates   3688501..3688620 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS361     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3683501..3693620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL49_RS19040 albG 3683665..3684366 (+) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  WHL49_RS19045 ywhL 3684372..3685748 (-) 1377 WP_003244415.1 YncE family protein -
  WHL49_RS19050 ywhK 3685787..3687142 (-) 1356 WP_003227552.1 YncE family protein -
  WHL49_RS19055 - 3687139..3687369 (-) 231 WP_009968328.1 hypothetical protein -
  WHL49_RS19060 rapF 3687372..3688517 (+) 1146 WP_003227549.1 response regulator aspartate phosphatase RapF Regulator
  WHL49_RS19065 phrF 3688501..3688620 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  WHL49_RS19070 ywhH 3688719..3689192 (+) 474 WP_003227547.1 YbaK/EbsC family protein -
  WHL49_RS19075 speB 3689224..3690096 (-) 873 WP_003227545.1 agmatinase -
  WHL49_RS19080 speE 3690157..3690987 (-) 831 WP_003227543.1 spermidine synthase -
  WHL49_RS19085 pbpG 3691189..3693264 (+) 2076 WP_003227540.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=950552 WHL49_RS19065 WP_009968329.1 3688501..3688620(+) (phrF) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=950552 WHL49_RS19065 WP_009968329.1 3688501..3688620(+) (phrF) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487