Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   WHL51_RS17650 Genome accession   NZ_CP148102
Coordinates   3433416..3434798 (-) Length   460 a.a.
NCBI ID   WP_079996654.1    Uniprot ID   -
Organism   Bacillus spizizenii str. W23     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3428416..3439798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL51_RS17615 flgL 3428580..3429476 (-) 897 WP_003219718.1 flagellar hook-associated protein FlgL -
  WHL51_RS17620 flgK 3429486..3431009 (-) 1524 WP_003219716.1 flagellar hook-associated protein FlgK -
  WHL51_RS17625 flgN 3431028..3431510 (-) 483 WP_003219714.1 flagellar protein FlgN -
  WHL51_RS17630 flgM 3431526..3431792 (-) 267 WP_003219712.1 flagellar biosynthesis anti-sigma factor FlgM -
  WHL51_RS17635 - 3431873..3432292 (-) 420 WP_003219710.1 TIGR03826 family flagellar region protein -
  WHL51_RS17640 comFC 3432365..3433087 (-) 723 WP_013308058.1 ComF family protein Machinery gene
  WHL51_RS17645 comFB 3433051..3433347 (-) 297 WP_003219707.1 late competence protein ComFB -
  WHL51_RS17650 comFA 3433416..3434798 (-) 1383 WP_079996654.1 ATP-dependent helicase ComFA Machinery gene
  WHL51_RS17655 - 3434906..3435751 (-) 846 WP_003219702.1 DegV family protein -
  WHL51_RS17660 degU 3435849..3436538 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WHL51_RS17665 degS 3436621..3437778 (-) 1158 WP_003219693.1 two-component sensor histidine kinase DegS Regulator
  WHL51_RS17670 - 3437994..3438647 (+) 654 WP_003219692.1 YigZ family protein -
  WHL51_RS17675 - 3438647..3439771 (+) 1125 WP_003219689.1 LCP family protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 52001.04 Da        Isoelectric Point: 9.5507

>NTDB_id=950459 WHL51_RS17650 WP_079996654.1 3433416..3434798(-) (comFA) [Bacillus spizizenii str. W23]
MIVPAEKNISFSKELQQTLQSRHLLRTELPFSDELIEWHTENGYIAAQNSISINKRGYQCNRCGQNDQRYFSFYPSSGKN
RLYCRSCVMMGRVSEDVLLYSWIGEDEQNWQQIKLTWDGKLSSGQQKAANVLIDAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRIKAAFQCADISALYGGSDDKGCLSPLMISTTHQLLRYKGAFDVIIIDEVDAFPY
SADQTLQFAVQKARKKSSTLVYVSATPSQELKRKTLNGQLYSVRIPARHHQKPLPEPRFLWCGNWKKKLYRNKIPLAVKR
WIEFHVKEGRPVFLFVPSVSVLEKAVACFKDVICRAAAVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTIPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEHADGDVIFFHYGKTKSMLDARKHIKEMNALAAKKE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=950459 WHL51_RS17650 WP_079996654.1 3433416..3434798(-) (comFA) [Bacillus spizizenii str. W23]
CTGATTGTGCCAGCTGAAAAGAACATTTCTTTTTCAAAAGAATTGCAGCAGACGCTTCAAAGCCGTCATTTGCTCAGAAC
CGAACTCCCATTTTCCGATGAGTTGATTGAATGGCATACCGAGAATGGATATATCGCAGCACAAAACTCTATATCTATAA
ATAAACGGGGGTATCAGTGTAATAGGTGCGGCCAAAATGATCAGCGGTATTTTTCTTTTTACCCCTCATCTGGAAAGAAT
CGGCTGTATTGTCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGATGTTCTTTTATATTCGTGGATAGGAGAGGATGA
ACAAAACTGGCAACAAATAAAGCTGACATGGGATGGCAAGCTCTCAAGCGGACAGCAAAAAGCCGCCAATGTCTTAATTG
ATGCAATATCAAAAAAAGAAGAGCTCCTCATTTGGGCAGTTTGCGGCGCTGGGAAAACAGAGATGTTATTCCCCGGTATA
GAATCCGCGTTAAATCAAGGGTTGCGTGTGTGTATTGCGACACCCCGCACCGATGTGGTATTAGAGCTTGCTCCTAGAAT
TAAGGCTGCCTTTCAGTGTGCTGACATTTCAGCACTTTACGGAGGAAGTGATGACAAAGGGTGTTTATCTCCGCTTATGA
TTTCCACCACACATCAGCTTTTGCGATATAAAGGCGCATTCGACGTTATAATCATTGATGAAGTTGATGCTTTTCCGTAT
TCTGCTGATCAAACTCTTCAATTCGCTGTTCAAAAAGCTAGAAAGAAAAGCAGCACCCTTGTTTATGTAAGTGCAACACC
TTCTCAAGAATTAAAAAGAAAAACACTGAACGGACAGTTATATTCAGTTCGTATTCCAGCCAGACACCATCAGAAACCTT
TGCCTGAACCGCGCTTTCTATGGTGTGGAAACTGGAAAAAGAAATTATACCGAAATAAAATTCCGCTAGCGGTAAAAAGA
TGGATAGAGTTTCATGTGAAAGAAGGGAGGCCTGTTTTTTTGTTTGTTCCCTCCGTTTCTGTTCTGGAAAAGGCAGTTGC
ATGCTTTAAAGATGTTATTTGCCGAGCAGCGGCAGTGCATGCGGAAGATAAACACAGAAAAGAGAAAGTACAGCAATTCA
GAGACGGTCAGCTTGATCTCTTAATCACAACAACAATATTAGAAAGAGGCGTCACGATTCCCAAGGTGCAAACGGGTGTA
TTAGGGGCGGAATCGCCTATCTTTACGGAAAGCGCACTTGTTCAAATCGCAGGAAGAACCGGGCGGCATAAAGAGCATGC
AGACGGTGATGTCATTTTCTTTCACTACGGAAAAACAAAGAGTATGCTGGATGCAAGAAAGCATATAAAAGAAATGAATG
CCTTGGCAGCAAAAAAAGAATGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

88.478

100

0.885