Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   WHL51_RS17640 Genome accession   NZ_CP148102
Coordinates   3432365..3433087 (-) Length   240 a.a.
NCBI ID   WP_013308058.1    Uniprot ID   E0U4A6
Organism   Bacillus spizizenii str. W23     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3427365..3438087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL51_RS17605 fliW 3427506..3427937 (-) 432 WP_003219723.1 flagellar assembly protein FliW -
  WHL51_RS17610 - 3427958..3428533 (-) 576 WP_003219720.1 DUF6470 family protein -
  WHL51_RS17615 flgL 3428580..3429476 (-) 897 WP_003219718.1 flagellar hook-associated protein FlgL -
  WHL51_RS17620 flgK 3429486..3431009 (-) 1524 WP_003219716.1 flagellar hook-associated protein FlgK -
  WHL51_RS17625 flgN 3431028..3431510 (-) 483 WP_003219714.1 flagellar protein FlgN -
  WHL51_RS17630 flgM 3431526..3431792 (-) 267 WP_003219712.1 flagellar biosynthesis anti-sigma factor FlgM -
  WHL51_RS17635 - 3431873..3432292 (-) 420 WP_003219710.1 TIGR03826 family flagellar region protein -
  WHL51_RS17640 comFC 3432365..3433087 (-) 723 WP_013308058.1 ComF family protein Machinery gene
  WHL51_RS17645 comFB 3433051..3433347 (-) 297 WP_003219707.1 late competence protein ComFB -
  WHL51_RS17650 comFA 3433416..3434798 (-) 1383 WP_079996654.1 ATP-dependent helicase ComFA Machinery gene
  WHL51_RS17655 - 3434906..3435751 (-) 846 WP_003219702.1 DegV family protein -
  WHL51_RS17660 degU 3435849..3436538 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WHL51_RS17665 degS 3436621..3437778 (-) 1158 WP_003219693.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27297.64 Da        Isoelectric Point: 9.4915

>NTDB_id=950458 WHL51_RS17640 WP_013308058.1 3432365..3433087(-) (comFC) [Bacillus spizizenii str. W23]
MPNEAGGGIYKLICLLCDSPFSQAITWRALFLLKPEEKVCHTCRSKLKKITGHICTLCGRPQSVHAVCKDCEAWKSRVSD
SLLLRQNRSVYTYNDVMKETLSRFKFRGDAEIINAFKSDFSSTFSQVYPDKHFVLVPIPLSKEREEERGFNQARLLAECL
DRPIHHPLIRLNNEKQSKKKKTERLLSARIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGRAASVASFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=950458 WHL51_RS17640 WP_013308058.1 3432365..3433087(-) (comFC) [Bacillus spizizenii str. W23]
ATGCCAAATGAAGCAGGAGGAGGCATTTATAAACTGATCTGTCTATTATGCGATTCGCCATTTTCTCAAGCTATTACATG
GAGAGCTCTTTTTTTATTAAAGCCTGAAGAAAAGGTCTGCCATACCTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCACCCTGTGCGGCAGACCTCAATCCGTTCATGCGGTATGCAAAGATTGCGAAGCATGGAAATCAAGAGTCAGTGAC
AGCTTGCTGCTGCGCCAAAACCGTTCAGTTTACACATATAATGATGTGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCTTTTAAAAGTGATTTTTCTTCAACCTTTTCACAGGTTTACCCCGATAAGCATTTTG
TTCTTGTTCCTATTCCGCTTAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACGGCTCCTGGCAGAATGTTTA
GACCGGCCTATCCACCACCCCCTCATCCGCTTGAATAATGAGAAACAGTCTAAGAAAAAGAAAACAGAACGTCTGCTTTC
AGCGCGTATTTTTGATACAAAAAACAACTCAGCTGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACTTTGCATTTTGCAGCCCGCTGTTTATTAGAGAAAGGAAGAGCCGCTTCAGTGGCATCTTTTACCTTAATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0U4A6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

90.417

100

0.904