Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   UXR46_RS12460 Genome accession   NZ_CP148079
Coordinates   2441499..2442371 (-) Length   290 a.a.
NCBI ID   WP_338909147.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN155-2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2436499..2447371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UXR46_RS12450 (UXR46_12450) trmFO 2437787..2439094 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  UXR46_RS12455 (UXR46_12455) topA 2439250..2441325 (-) 2076 WP_001548566.1 type I DNA topoisomerase -
  UXR46_RS12460 (UXR46_12460) dprA 2441499..2442371 (-) 873 WP_338909147.1 DNA-processing protein DprA Machinery gene
  UXR46_RS12465 (UXR46_12465) fmhC 2442544..2443788 (-) 1245 WP_000672867.1 FemA/FemB family glycyltransferase FmhC -
  UXR46_RS12470 (UXR46_12470) - 2443816..2444934 (-) 1119 WP_001041662.1 LysM peptidoglycan-binding domain-containing protein -
  UXR46_RS12475 (UXR46_12475) sucD 2445161..2446069 (-) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  UXR46_RS12480 (UXR46_12480) sucC 2446091..2447257 (-) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33596.00 Da        Isoelectric Point: 9.5094

>NTDB_id=950353 UXR46_RS12460 WP_338909147.1 2441499..2442371(-) (dprA) [Staphylococcus aureus strain BSN155-2]
MIKLFLLKLYWAHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPQHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=950353 UXR46_RS12460 WP_338909147.1 2441499..2442371(-) (dprA) [Staphylococcus aureus strain BSN155-2]
TTGATTAAACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCTGAATATCCACAACATACACCAATCGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

99.655

100

0.997
  dprA Staphylococcus aureus N315

99.31

100

0.993