Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   UXR46_RS10575 Genome accession   NZ_CP148079
Coordinates   2052678..2053124 (+) Length   148 a.a.
NCBI ID   WP_001791635.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN155-2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2047678..2058124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UXR46_RS10540 (UXR46_10540) - 2048172..2048375 (+) 204 WP_000087561.1 YqgQ family protein -
  UXR46_RS10545 (UXR46_10545) - 2048372..2049358 (+) 987 WP_000161314.1 ROK family glucokinase -
  UXR46_RS10550 (UXR46_10550) - 2049358..2049687 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  UXR46_RS10555 (UXR46_10555) - 2049684..2050307 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  UXR46_RS10560 (UXR46_10560) comGA 2050359..2051333 (+) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  UXR46_RS10565 (UXR46_10565) comGB 2051305..2052375 (+) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  UXR46_RS10570 (UXR46_10570) comGC 2052389..2052700 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  UXR46_RS10575 (UXR46_10575) comGD 2052678..2053124 (+) 447 WP_001791635.1 competence type IV pilus minor pilin ComGD Machinery gene
  UXR46_RS10580 (UXR46_10580) comGE 2053111..2053410 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  UXR46_RS10585 (UXR46_10585) comGF 2053328..2053825 (+) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  UXR46_RS10590 (UXR46_10590) - 2053922..2054068 (+) 147 WP_001789879.1 hypothetical protein -
  UXR46_RS10595 (UXR46_10595) - 2054058..2054582 (+) 525 WP_001015117.1 shikimate kinase -
  UXR46_RS10600 (UXR46_10600) gcvT 2054741..2055832 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  UXR46_RS10605 (UXR46_10605) gcvPA 2055852..2057198 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17199.34 Da        Isoelectric Point: 10.2908

>NTDB_id=950346 UXR46_RS10575 WP_001791635.1 2052678..2053124(+) (comGD) [Staphylococcus aureus strain BSN155-2]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNNIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=950346 UXR46_RS10575 WP_001791635.1 2052678..2053124(+) (comGD) [Staphylococcus aureus strain BSN155-2]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAATATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986