Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ACHWYH_RS07990 Genome accession   NZ_CP172084
Coordinates   1590649..1591884 (+) Length   411 a.a.
NCBI ID   WP_032823723.1    Uniprot ID   -
Organism   Haemophilus influenzae strain GA81666     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1585649..1596884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHWYH_RS07965 - 1587791..1588174 (-) 384 Protein_1519 TonB-dependent receptor plug domain-containing protein -
  ACHWYH_RS07970 - 1588123..1588266 (-) 144 WP_223267138.1 PT domain-containing protein -
  ACHWYH_RS07975 - 1588220..1588333 (-) 114 Protein_1521 hypothetical protein -
  ACHWYH_RS07980 tig 1588637..1589935 (+) 1299 WP_006995277.1 trigger factor -
  ACHWYH_RS07985 clpP 1590058..1590639 (+) 582 WP_005648605.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  ACHWYH_RS07990 clpX 1590649..1591884 (+) 1236 WP_032823723.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  ACHWYH_RS07995 secE 1592028..1592444 (+) 417 WP_005648602.1 preprotein translocase subunit SecE -
  ACHWYH_RS08000 nusG 1592446..1593003 (+) 558 WP_005648601.1 transcription termination/antitermination protein NusG -
  ACHWYH_RS08005 - 1593101..1593853 (+) 753 WP_005693034.1 VacJ family lipoprotein -
  ACHWYH_RS08010 - 1593910..1594299 (+) 390 WP_005630808.1 RidA family protein -
  ACHWYH_RS08015 htpX 1594464..1595318 (+) 855 WP_162837812.1 protease HtpX -
  ACHWYH_RS08020 tusA 1595360..1595599 (-) 240 WP_005665561.1 sulfurtransferase TusA -
  ACHWYH_RS08025 - 1595715..1596335 (+) 621 WP_032826248.1 YigZ family protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45721.30 Da        Isoelectric Point: 4.7428

>NTDB_id=949937 ACHWYH_RS07990 WP_032823723.1 1590649..1591884(+) (clpX) [Haemophilus influenzae strain GA81666]
MTDKDKDLHCSFCGKEKGEVDKLISGTDGYICNECIELCHSMLEESHDKNLEESAVENEEKLPTPHEIRAHLDDYVIGQD
YAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVL
QKLLQNCEYDTEKAEKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKLDTSK
ILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKFGLIPEFIGRLPMIAPLSELDEDAL
IQILTKPKNALIKQYQALFGLEKVELDFTPEALKAMAKKALERKTGARGLRSIVEAVLLDTMYDLPSLENLQKVIVDEST
IVDNLAPKLEY

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=949937 ACHWYH_RS07990 WP_032823723.1 1590649..1591884(+) (clpX) [Haemophilus influenzae strain GA81666]
ATGACAGACAAAGATAAAGATTTGCACTGCTCTTTTTGCGGAAAAGAAAAAGGCGAAGTAGATAAATTAATTTCTGGCAC
AGACGGTTATATTTGTAATGAATGTATTGAACTTTGTCACTCAATGCTTGAAGAAAGTCATGATAAAAATTTAGAGGAAA
GTGCGGTAGAAAATGAAGAAAAATTACCAACGCCTCACGAAATTCGTGCTCATCTAGATGATTATGTTATCGGTCAAGAT
TATGCGAAAAAAGTGCTTTCTGTGGCAGTTTATAATCATTATAAACGCTTGCGAACTAACTATGAAAGTAATGATGTAGA
GCTTGGTAAAAGTAATATTTTACTTATAGGCCCTACAGGTAGCGGAAAAACGTTACTTGCGCAAACATTAGCTCGTCGTT
TAAATGTACCCTTTGCGATGGCGGATGCAACCACATTAACGGAAGCTGGTTATGTGGGAGAAGATGTGGAGAATGTATTA
CAGAAACTTTTGCAAAATTGTGAATACGATACTGAAAAAGCAGAGAAAGGCATTATTTATATTGATGAAATTGATAAAAT
TAGCCGTAAATCGGAAGGTGCATCAATTACTCGAGATGTTTCAGGGGAGGGGGTGCAACAGGCTTTATTAAAACTTATTG
AAGGTACAATCGCTTCCATTCCACCTCAAGGCGGTCGTAAACATCCACAACAAGAAATGGTAAAATTGGATACGTCTAAA
ATTCTCTTTATTTGTGGCGGTGCATTTGCAGGATTAGATAAAATTATTGATAAACGCACTCAAACCAGTACGAGTATTGG
TTTTAATGCCAAAGTTGAAAAAGATGAAAAACAACAATCTCTTTCTGAATTATTCCGTCAAGTTGAACCTGATGATTTGA
TGAAATTTGGTTTAATTCCAGAATTTATCGGACGTTTGCCAATGATTGCCCCATTAAGTGAATTAGACGAAGATGCGCTG
ATACAAATTCTCACAAAACCAAAAAACGCATTAATTAAACAATATCAAGCCTTATTTGGATTGGAAAAAGTAGAATTGGA
TTTCACACCAGAAGCATTAAAAGCAATGGCAAAAAAAGCACTTGAAAGAAAAACAGGTGCGCGTGGCTTACGTTCTATCG
TAGAAGCAGTGTTGTTAGATACAATGTATGATCTACCGTCTCTTGAGAATTTACAAAAAGTTATCGTTGATGAATCGACA
ATTGTAGATAATCTTGCGCCCAAATTAGAATATTAG

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(315-392)

ClpX C4-type zinc finger (zf-C4_ClpX)

(8-45)

AAA domain (Cdc48 subfamily) (AAA_2)

(110-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

57.353

99.27

0.569
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.5

97.324

0.54