Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   WGQ51_RS04960 Genome accession   NZ_CP148000
Coordinates   930784..931437 (+) Length   217 a.a.
NCBI ID   WP_263658217.1    Uniprot ID   A0A7U7X784
Organism   Campylobacter lari strain NPRC(S) 01.13900     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 925784..936437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGQ51_RS04935 (WGQ51_04935) - 925881..927401 (-) 1521 WP_220516592.1 inorganic phosphate transporter -
  WGQ51_RS04940 (WGQ51_04940) pdxA 927448..928548 (-) 1101 WP_220701350.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  WGQ51_RS04945 (WGQ51_04945) - 928545..929312 (-) 768 WP_263668453.1 pyridoxine 5'-phosphate synthase -
  WGQ51_RS04950 (WGQ51_04950) - 929368..930333 (+) 966 WP_074691855.1 exopolyphosphatase -
  WGQ51_RS04955 (WGQ51_04955) - 930344..930787 (+) 444 WP_012661640.1 GatB/YqeY domain-containing protein -
  WGQ51_RS04960 (WGQ51_04960) CJE0566 930784..931437 (+) 654 WP_263658217.1 DNA/RNA non-specific endonuclease Regulator
  WGQ51_RS04965 (WGQ51_04965) dnaK 931471..933339 (-) 1869 WP_263658218.1 molecular chaperone DnaK -
  WGQ51_RS04970 (WGQ51_04970) grpE 933362..933871 (-) 510 WP_220701356.1 nucleotide exchange factor GrpE -
  WGQ51_RS04975 (WGQ51_04975) - 933868..934650 (-) 783 WP_173786653.1 HrcA family transcriptional regulator -
  WGQ51_RS04980 (WGQ51_04980) - 934893..935024 (+) 132 WP_255197728.1 hypothetical protein -
  WGQ51_RS04985 (WGQ51_04985) - 935013..935642 (-) 630 WP_173786652.1 hypothetical protein -
  WGQ51_RS04990 (WGQ51_04990) - 935639..935869 (-) 231 WP_263668452.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 26061.11 Da        Isoelectric Point: 9.7936

>NTDB_id=949913 WGQ51_RS04960 WP_263658217.1 930784..931437(+) (CJE0566) [Campylobacter lari strain NPRC(S) 01.13900]
MKKALILCTLALSSFAYTQYELDPSFKKYFQNCSLLMDKYYYINCYDYNYKGTKAIAYKLEARILNQKHIKKRPKFKDDT
NIPKKYRTYWEDYIKSGYTRGHVVPNQSMNTTPQAQLSTFLMSNITPQKKDINAKIWNEIEQRERYLAKKYKELEVLNLI
LYDDKPKRIKNNIAIPSFYVKILKAKNYSECYKVPNNDNFAEFDKNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=949913 WGQ51_RS04960 WP_263658217.1 930784..931437(+) (CJE0566) [Campylobacter lari strain NPRC(S) 01.13900]
ATGAAAAAAGCCTTAATTCTTTGCACTCTAGCCTTAAGCTCTTTTGCATACACTCAATATGAGCTTGATCCTAGCTTTAA
AAAGTATTTTCAAAATTGCTCTTTATTGATGGATAAGTATTATTATATTAATTGTTATGATTATAACTATAAAGGCACTA
AAGCAATAGCTTATAAACTTGAAGCTAGAATTTTAAATCAAAAACACATTAAAAAACGCCCAAAATTTAAAGATGATACT
AACATTCCTAAAAAATATAGAACTTATTGGGAAGATTATATAAAAAGTGGTTATACAAGAGGGCATGTCGTGCCAAATCA
ATCCATGAATACAACCCCACAAGCCCAACTTAGCACTTTTTTAATGAGCAATATAACCCCACAAAAAAAAGATATCAATG
CAAAAATTTGGAATGAAATTGAACAAAGAGAAAGATATCTTGCAAAAAAATACAAAGAATTAGAAGTGCTAAATTTAATA
CTTTATGATGATAAGCCAAAACGCATTAAAAATAATATCGCCATTCCTAGTTTTTATGTAAAAATTTTAAAAGCTAAAAA
TTATAGTGAATGTTATAAAGTGCCAAATAATGATAATTTTGCAGAATTTGATAAAAATTATTTTAAAGAAGATTGTAAGA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(36-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7X784

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

59.447

100

0.594
  CJE1441 Campylobacter jejuni RM1221

63.682

92.627

0.59