Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ACHWYG_RS08050 Genome accession   NZ_CP172082
Coordinates   1597936..1599171 (+) Length   411 a.a.
NCBI ID   WP_005658618.1    Uniprot ID   -
Organism   Haemophilus influenzae strain GA54827     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1592936..1604171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHWYG_RS08030 - 1595084..1595500 (-) 417 Protein_1533 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  ACHWYG_RS08035 - 1595416..1595622 (-) 207 WP_395482549.1 PT domain-containing protein -
  ACHWYG_RS08040 tig 1595924..1597222 (+) 1299 WP_118804411.1 trigger factor -
  ACHWYG_RS08045 clpP 1597345..1597926 (+) 582 WP_005648605.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  ACHWYG_RS08050 clpX 1597936..1599171 (+) 1236 WP_005658618.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  ACHWYG_RS08055 secE 1599315..1599731 (+) 417 WP_005648602.1 preprotein translocase subunit SecE -
  ACHWYG_RS08060 nusG 1599733..1600290 (+) 558 WP_005648601.1 transcription termination/antitermination protein NusG -
  ACHWYG_RS08065 - 1600388..1601140 (+) 753 WP_118804410.1 VacJ family lipoprotein -
  ACHWYG_RS08070 - 1601197..1601586 (+) 390 WP_005630808.1 RidA family protein -
  ACHWYG_RS08075 htpX 1601751..1602605 (+) 855 WP_171034537.1 protease HtpX -
  ACHWYG_RS08080 tusA 1602647..1602886 (-) 240 WP_005665561.1 sulfurtransferase TusA -
  ACHWYG_RS08085 - 1603002..1603622 (+) 621 WP_050847720.1 YigZ family protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45610.20 Da        Isoelectric Point: 4.7350

>NTDB_id=949874 ACHWYG_RS08050 WP_005658618.1 1597936..1599171(+) (clpX) [Haemophilus influenzae strain GA54827]
MTDKDKDLHCSFCGKEKGEVDKLIAGTGGYICNECIELCHSMLEESNDENLEESAVENKDKLPTPHEIRAHLDDYVIGQD
YAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVL
QKLLQNCEYDTEKAEKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKLDTSK
ILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKFGLIPEFIGRLPMIAPLSELDEDAL
IQILTKPKNALIKQYQALFGLEKVELDFTPEALKAMAKKALERKTGARGLRSIVEAVLLDTMYDLPSLENLQKVIVDEST
IVDNLAPKLEY

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=949874 ACHWYG_RS08050 WP_005658618.1 1597936..1599171(+) (clpX) [Haemophilus influenzae strain GA54827]
ATGACAGACAAAGATAAAGATTTGCACTGCTCTTTTTGCGGAAAAGAAAAAGGCGAAGTAGATAAATTAATTGCTGGCAC
AGGCGGTTATATTTGTAATGAATGTATTGAACTTTGTCACTCAATGCTTGAAGAAAGTAATGATGAAAATTTAGAGGAAA
GTGCGGTCGAAAATAAAGATAAATTGCCAACGCCTCACGAAATTCGCGCCCATCTGGATGATTATGTTATTGGTCAAGAT
TATGCGAAAAAAGTGCTTTCTGTGGCAGTTTATAATCATTATAAACGCTTGCGAACTAACTATGAAAGCAATGATGTAGA
GCTTGGTAAAAGTAATATTTTACTTATAGGGCCTACGGGTAGCGGAAAAACGTTACTTGCGCAAACATTAGCTCGTCGTT
TAAATGTACCCTTTGCGATGGCAGATGCAACCACATTAACGGAAGCTGGTTATGTGGGAGAAGATGTGGAGAATGTATTA
CAGAAACTTTTGCAAAATTGTGAATACGATACTGAAAAAGCAGAGAAAGGCATTATTTATATTGATGAAATTGATAAAAT
TAGCCGTAAATCGGAAGGTGCATCAATTACTCGAGATGTTTCAGGAGAGGGGGTGCAACAGGCTTTATTAAAACTTATTG
AAGGTACAATCGCTTCAATTCCACCTCAAGGCGGTCGTAAACATCCACAACAAGAAATGGTAAAATTGGATACGTCTAAA
ATTCTCTTTATTTGCGGCGGTGCATTTGCAGGATTAGATAAAATTATTGATAAACGCACTCAAACCAGTACGAGTATTGG
TTTTAATGCCAAAGTTGAAAAAGATGAAAAACAACAATCTCTTTCTGAATTATTCCGTCAAGTTGAACCTGATGATTTGA
TGAAATTTGGTTTAATTCCAGAATTTATCGGACGCTTGCCAATGATTGCCCCATTAAGTGAATTAGACGAAGATGCACTG
ATACAAATTCTCACAAAACCAAAAAACGCATTAATTAAACAATATCAAGCCTTATTTGGATTGGAAAAAGTAGAATTGGA
TTTCACACCAGAAGCATTAAAAGCAATGGCGAAAAAAGCACTTGAAAGAAAAACAGGTGCGCGTGGCTTACGTTCTATCG
TAGAAGCAGTGTTGTTAGATACAATGTATGATCTACCGTCTCTTGAGAATTTACAAAAAGTTATCGTTGATGAATCGACA
ATTGTAGATAATCTTGCGCCCAAATTAGAATATTAG

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(110-309)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(315-392)

ClpX C4-type zinc finger (zf-C4_ClpX)

(8-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

57.843

99.27

0.574
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.138

97.08

0.535