Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   WAE38_RS09325 Genome accession   NZ_CP147984
Coordinates   1852524..1852865 (+) Length   113 a.a.
NCBI ID   WP_021112680.1    Uniprot ID   A0A1T0AD78
Organism   Glaesserella parasuis strain H16SD2BY4     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1853189..1853728 1852524..1852865 flank 324


Gene organization within MGE regions


Location: 1852524..1853728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAE38_RS09325 (WAE38_09325) comEA/comE1 1852524..1852865 (+) 342 WP_021112680.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12447.29 Da        Isoelectric Point: 9.8973

>NTDB_id=949845 WAE38_RS09325 WP_021112680.1 1852524..1852865(+) (comEA/comE1) [Glaesserella parasuis strain H16SD2BY4]
MKKLSRYTFSLLFGLFSATTFAEEKVTTSTEHTPVVMQQVAATQKVNANVVNINTATASEIQDKLVGIGAKKAQAIVEYR
EKNGKFLNVEQLTEVSGIGKATLEKNRDRIVIE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=949845 WAE38_RS09325 WP_021112680.1 1852524..1852865(+) (comEA/comE1) [Glaesserella parasuis strain H16SD2BY4]
ATGAAAAAACTTTCTCGTTACACATTCAGTCTTTTATTTGGGCTTTTCTCTGCAACAACATTTGCTGAAGAAAAAGTAAC
TACGTCAACAGAACATACACCGGTAGTGATGCAACAAGTCGCAGCGACACAAAAAGTAAATGCGAATGTTGTAAATATCA
ATACTGCGACAGCCTCAGAAATCCAAGATAAGTTAGTCGGTATTGGAGCGAAAAAGGCTCAGGCAATTGTGGAATATCGT
GAGAAAAACGGTAAGTTTTTAAATGTTGAGCAGCTCACCGAAGTTTCAGGTATCGGGAAAGCGACACTTGAAAAAAACCG
AGATCGTATTGTGATTGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T0AD78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

99.115

100

0.991
  comE1/comEA Haemophilus influenzae Rd KW20

59.13

100

0.602