Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   WAE38_RS09325 Genome accession   NZ_CP147984
Coordinates   1852524..1852865 (+) Length   113 a.a.
NCBI ID   WP_021112680.1    Uniprot ID   A0A1T0AD78
Organism   Glaesserella parasuis strain H16SD2BY4     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1847524..1857865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAE38_RS09305 (WAE38_09305) - 1848799..1849386 (-) 588 WP_021111029.1 NAD(P)H-dependent oxidoreductase -
  WAE38_RS09310 (WAE38_09310) waaF 1849482..1850534 (-) 1053 WP_279405753.1 lipopolysaccharide heptosyltransferase II -
  WAE38_RS09315 (WAE38_09315) - 1850543..1850809 (-) 267 WP_234701705.1 MliC family protein -
  WAE38_RS09320 (WAE38_09320) - 1851001..1852266 (-) 1266 WP_021112664.1 LysM-like peptidoglycan-binding domain-containing protein -
  WAE38_RS09325 (WAE38_09325) comEA/comE1 1852524..1852865 (+) 342 WP_021112680.1 helix-hairpin-helix domain-containing protein Machinery gene
  WAE38_RS09335 (WAE38_09335) epmA 1853868..1854848 (+) 981 WP_261477020.1 elongation factor P--(R)-beta-lysine ligase -
  WAE38_RS09340 (WAE38_09340) - 1854902..1855180 (+) 279 WP_005714674.1 DUF1778 domain-containing protein -
  WAE38_RS09345 (WAE38_09345) - 1855181..1855678 (+) 498 WP_021112650.1 GNAT family N-acetyltransferase -
  WAE38_RS09350 (WAE38_09350) - 1855692..1856474 (+) 783 WP_010786292.1 YchF/TatD family DNA exonuclease -
  WAE38_RS09355 (WAE38_09355) - 1856514..1857041 (+) 528 WP_035522822.1 DUF1523 family protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12447.29 Da        Isoelectric Point: 9.8973

>NTDB_id=949845 WAE38_RS09325 WP_021112680.1 1852524..1852865(+) (comEA/comE1) [Glaesserella parasuis strain H16SD2BY4]
MKKLSRYTFSLLFGLFSATTFAEEKVTTSTEHTPVVMQQVAATQKVNANVVNINTATASEIQDKLVGIGAKKAQAIVEYR
EKNGKFLNVEQLTEVSGIGKATLEKNRDRIVIE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=949845 WAE38_RS09325 WP_021112680.1 1852524..1852865(+) (comEA/comE1) [Glaesserella parasuis strain H16SD2BY4]
ATGAAAAAACTTTCTCGTTACACATTCAGTCTTTTATTTGGGCTTTTCTCTGCAACAACATTTGCTGAAGAAAAAGTAAC
TACGTCAACAGAACATACACCGGTAGTGATGCAACAAGTCGCAGCGACACAAAAAGTAAATGCGAATGTTGTAAATATCA
ATACTGCGACAGCCTCAGAAATCCAAGATAAGTTAGTCGGTATTGGAGCGAAAAAGGCTCAGGCAATTGTGGAATATCGT
GAGAAAAACGGTAAGTTTTTAAATGTTGAGCAGCTCACCGAAGTTTCAGGTATCGGGAAAGCGACACTTGAAAAAAACCG
AGATCGTATTGTGATTGAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(46-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

99.115

100

0.991
  comE1/comEA Haemophilus influenzae Rd KW20

59.13

100

0.602