Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AAA982_RS00420 Genome accession   NZ_AP028601
Coordinates   72662..73432 (+) Length   256 a.a.
NCBI ID   WP_000616162.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PF1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 67662..78432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA982_RS00400 (TKY113292_00750) - 69670..70107 (+) 438 WP_050198148.1 CoA-binding protein -
  AAA982_RS00405 - 70148..70318 (+) 171 WP_041852864.1 hypothetical protein -
  AAA982_RS00410 (TKY113292_00760) - 70337..71347 (-) 1011 WP_050204489.1 YeiH family protein -
  AAA982_RS00415 (TKY113292_00770) - 71496..72665 (+) 1170 WP_338168295.1 pyridoxal phosphate-dependent aminotransferase -
  AAA982_RS00420 (TKY113292_00780) recO 72662..73432 (+) 771 WP_000616162.1 DNA repair protein RecO Machinery gene
  AAA982_RS00425 (TKY113292_00790) plsX 73429..74421 (+) 993 WP_050311686.1 phosphate acyltransferase PlsX -
  AAA982_RS00430 (TKY113292_00800) - 74427..74660 (+) 234 WP_000659556.1 acyl carrier protein -
  AAA982_RS00435 - 74706..74997 (+) 292 Protein_79 IS5/IS1182 family transposase -
  AAA982_RS00440 blpU 75200..75430 (+) 231 Protein_80 bacteriocin-like peptide BlpU -
  AAA982_RS00445 (TKY113292_00810) - 75433..75558 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  AAA982_RS00450 (TKY113292_00820) comA 76145..78298 (+) 2154 WP_338168296.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29788.29 Da        Isoelectric Point: 5.3615

>NTDB_id=94960 AAA982_RS00420 WP_000616162.1 72662..73432(+) (recO) [Streptococcus pneumoniae strain PF1]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=94960 AAA982_RS00420 WP_000616162.1 72662..73432(+) (recO) [Streptococcus pneumoniae strain PF1]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGTCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.609

100

0.996

Multiple sequence alignment