Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WFA80_RS00040 Genome accession   NZ_CP147891
Coordinates   8612..9130 (+) Length   172 a.a.
NCBI ID   WP_003648134.1    Uniprot ID   A0A133PDF0
Organism   Lactobacillus gasseri strain CUDS2831     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 68..10403 8612..9130 within 0
IS/Tn 7014..8063 8612..9130 flank 549


Gene organization within MGE regions


Location: 68..10403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WFA80_RS00010 yaaA 1083..1298 (+) 216 WP_035422981.1 S4 domain-containing protein YaaA -
  WFA80_RS00015 recF 1302..2426 (+) 1125 WP_020807246.1 DNA replication/repair protein RecF -
  WFA80_RS00020 gyrB 2427..4394 (+) 1968 WP_338815769.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  WFA80_RS00025 gyrA 4405..6894 (+) 2490 WP_020807248.1 DNA gyrase subunit A -
  WFA80_RS00030 - 7014..8063 (+) 1050 WP_087261310.1 IS30-like element ISLga1 family transposase -
  WFA80_RS00035 rpsF 8282..8578 (+) 297 WP_003648136.1 30S ribosomal protein S6 -
  WFA80_RS00040 ssb 8612..9130 (+) 519 WP_003648134.1 single-stranded DNA-binding protein Machinery gene
  WFA80_RS00045 rpsR 9155..9391 (+) 237 WP_003649728.1 30S ribosomal protein S18 -
  WFA80_RS00050 - 9486..10403 (+) 918 WP_020807249.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18499.16 Da        Isoelectric Point: 4.7531

>NTDB_id=949306 WFA80_RS00040 WP_003648134.1 8612..9130(+) (ssb) [Lactobacillus gasseri strain CUDS2831]
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFVSCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSTNNAPAGGESNKPQDPFADSG
STIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=949306 WFA80_RS00040 WP_003648134.1 8612..9130(+) (ssb) [Lactobacillus gasseri strain CUDS2831]
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATACACCAATAGTCAAGGTGAACGTGGTGCTGATTTCGTCAGCTGTGTAATTT
GGCGTAAAGCCGCAGAGAATTTTGCTAACTTTACTTCAAAGGGTTCACTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTATGATGATAAAGATGGTAAGAGAGTCTACGTGACTGAAGTCATCGTTGATAATTTCTCTTTATTAGAATCACGTCG
TGACCGTGAGAATCGTCAGACTAATGGTGGTAATTTTGCTCCGCAAGGAGGAAATGCTCCAAGTACCAATAACTTTGGTG
GATCAAGTGCACCAAGCACTAATAATGCTCCTGCTGGTGGAGAAAGCAATAAACCGCAGGATCCATTTGCAGATTCAGGT
AGCACTATTGATATTTCGGATGATGATCTCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133PDF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.494

100

0.622
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.432

100

0.506