Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WFA81_RS14850 Genome accession   NZ_CP147890
Coordinates   3027066..3027662 (-) Length   198 a.a.
NCBI ID   WP_012490752.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain CUDS0725     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3022066..3032662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WFA81_RS14835 - 3022382..3023860 (-) 1479 WP_014566348.1 cytochrome ubiquinol oxidase subunit I -
  WFA81_RS14840 - 3024722..3026347 (-) 1626 WP_014566347.1 polysaccharide biosynthesis protein -
  WFA81_RS14845 rpsR 3026743..3026979 (-) 237 WP_003568467.1 30S ribosomal protein S18 -
  WFA81_RS14850 ssb 3027066..3027662 (-) 597 WP_012490752.1 single-stranded DNA-binding protein Machinery gene
  WFA81_RS14855 rpsF 3027693..3027989 (-) 297 WP_003568460.1 30S ribosomal protein S6 -
  WFA81_RS14860 ssb 3028117..3028548 (-) 432 WP_003568458.1 single-stranded DNA-binding protein -
  WFA81_RS14865 deoC 3028731..3029435 (+) 705 WP_003568456.1 deoxyribose-phosphate aldolase -
  WFA81_RS14870 gyrA 3029540..3032161 (-) 2622 WP_003584054.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21112.84 Da        Isoelectric Point: 4.9056

>NTDB_id=949304 WFA81_RS14850 WP_012490752.1 3027066..3027662(-) (ssb) [Lacticaseibacillus paracasei strain CUDS0725]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEAANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=949304 WFA81_RS14850 WP_012490752.1 3027066..3027662(-) (ssb) [Lacticaseibacillus paracasei strain CUDS0725]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGATGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAAGCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.505

100

0.505