Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACHGLA_RS16145 Genome accession   NZ_CP171841
Coordinates   3690297..3691700 (+) Length   467 a.a.
NCBI ID   WP_395361226.1    Uniprot ID   -
Organism   Streptomyces sp. YH02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3685297..3696700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGLA_RS16125 (ACHGLA_16125) - 3685481..3686317 (-) 837 WP_338495489.1 sugar phosphate isomerase/epimerase -
  ACHGLA_RS16130 (ACHGLA_16130) - 3686475..3687407 (-) 933 WP_395361223.1 Ppx/GppA family phosphatase -
  ACHGLA_RS16135 (ACHGLA_16135) - 3687449..3688276 (+) 828 WP_395361224.1 hypothetical protein -
  ACHGLA_RS16140 (ACHGLA_16140) - 3688336..3690135 (-) 1800 WP_395361225.1 hypothetical protein -
  ACHGLA_RS16145 (ACHGLA_16145) radA/sms 3690297..3691700 (+) 1404 WP_395361226.1 DNA repair protein RadA Machinery gene
  ACHGLA_RS16150 (ACHGLA_16150) disA 3692017..3693141 (+) 1125 WP_209495406.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  ACHGLA_RS16155 (ACHGLA_16155) - 3693297..3694160 (-) 864 WP_395361227.1 hypothetical protein -
  ACHGLA_RS16160 (ACHGLA_16160) - 3694408..3695079 (+) 672 WP_395361228.1 phosphatase PAP2 family protein -
  ACHGLA_RS16165 (ACHGLA_16165) - 3695260..3696183 (+) 924 WP_395367419.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 49141.22 Da        Isoelectric Point: 8.0021

>NTDB_id=949290 ACHGLA_RS16145 WP_395361226.1 3690297..3691700(+) (radA/sms) [Streptomyces sp. YH02]
MAARTKSTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAAGRVSTAAVPIGQVDGRQATARSTGVDEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRINALSDHLYLAAETDLSAVL
GHLDAVKPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDVAVPGTCLTVTLEGRRPLVAEVQSLTVDSQI
PSPRRTVSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGRVPPGMKVTEVADMGDALRVLPRSRRAKAPEGAEK

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=949290 ACHGLA_RS16145 WP_395361226.1 3690297..3691700(+) (radA/sms) [Streptomyces sp. YH02]
ATGGCTGCCCGTACGAAATCGACCAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCCGTCCGGACGACCGCGGCGGGCC
GGGTCTCCACCGCCGCGGTCCCCATCGGGCAGGTCGACGGCCGGCAGGCGACCGCCCGCTCGACCGGCGTCGACGAGCTG
GACCGGGTCCTCGGCGGGGGCCTGGTGCCCGGCGCCGTCGTGCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCCACGCT
CCTGCTCGACGTGGCGGCCAAGGCGGCCAGCGACGAGCACCGCACGCTCTACGTCACCGGCGAGGAGTCCGCGAGCCAGG
TCCGGCTGCGCGCCGACCGGATCAACGCCCTCAGCGACCATCTGTACCTCGCCGCCGAGACCGACCTGTCGGCCGTCCTC
GGGCACCTCGACGCCGTGAAGCCTTCACTGCTGATCATGGACTCGGTGCAGACCGTCGCCTCCCCCGAGATCGACGGCGC
GCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCGCTCATCCGGGCCTCCAAGGAGCGCGGCATGTCCACGCTCC
TCGTCGGCCATGTCACCAAGGACGGGGCGATCGCCGGCCCCCGGCTCCTGGAGCACCTGGTCGACGTCGTGCTGAGCTTC
GAGGGCGACCGGCACGCGCGTCTGCGGCTGGTCCGGGGCGTGAAGAACCGGTACGGGGCGACCGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCACGGGTCTGGCCGACCCCTCCGGGCTCTTCCTGACCCGGCGTGACGTGGCCGTGCCCG
GCACCTGTCTGACGGTCACCCTGGAGGGCCGCCGCCCGCTGGTCGCCGAGGTCCAGTCGCTGACCGTGGACAGCCAGATC
CCGTCCCCGCGCCGGACCGTCTCCGGTCTCGAGACCTCCCGGGTCTCGATGATGCTGGCGGTCCTGGAGCAGCGCGGCCG
AATCAGCGCGCTGGGCAAGCGGGACATCTACAGCGCGACCGTGGGCGGCGTGAAGCTCACCGAGCCCGCCGCCGACCTGG
CGATCGCGCTCGCGCTCGCCTCCGCGGCGAGCGACACCCCGCTGCCGAAGAACCTGGTGGCGATCGGCGAGGTCGGCCTC
GCGGGCGAGGTCCGGCGGGTGACGGGCGTCCAGCGCCGGCTCGCCGAGGCGCACCGGCTGGGCTTCACGCACGCGCTGGT
CCCCTCGGACCCGGGCAGGGTGCCGCCCGGCATGAAGGTGACGGAGGTCGCGGACATGGGCGACGCGCTGCGGGTGCTGC
CGCGCAGCCGACGCGCGAAGGCACCGGAGGGGGCGGAGAAGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-429)

AAA domain (AAA_25)

(82-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.584

96.788

0.422
  radA Streptococcus mitis NCTC 12261

42.572

96.574

0.411
  radA Streptococcus mitis SK321

43.448

93.148

0.405
  radA Streptococcus pneumoniae TIGR4

43.56

91.435

0.398
  radA Streptococcus pneumoniae Rx1

43.56

91.435

0.398
  radA Streptococcus pneumoniae D39

43.56

91.435

0.398
  radA Streptococcus pneumoniae R6

43.56

91.435

0.398