Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   WFE12_RS19180 Genome accession   NZ_CP147877
Coordinates   3646018..3646707 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3641018..3651707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WFE12_RS19145 flgN 3641198..3641680 (-) 483 WP_003227999.1 flagellar protein FlgN -
  WFE12_RS19150 flgM 3641696..3641962 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  WFE12_RS19155 yvyF 3642043..3642462 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  WFE12_RS19160 comFC 3642536..3643258 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  WFE12_RS19165 comFB 3643222..3643518 (-) 297 WP_003227989.1 late competence protein ComFB -
  WFE12_RS19170 comFA 3643578..3644969 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  WFE12_RS19175 fakBA 3645075..3645920 (-) 846 WP_003244125.1 DegV family protein -
  WFE12_RS19180 degU 3646018..3646707 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WFE12_RS19185 degS 3646790..3647947 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  WFE12_RS19190 yvyE 3648164..3648817 (+) 654 WP_003227979.1 YigZ family protein -
  WFE12_RS19195 tagV 3648817..3649992 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  WFE12_RS19200 tagO 3650065..3651141 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=949176 WFE12_RS19180 WP_003219701.1 3646018..3646707(-) (degU) [Bacillus subtilis subsp. subtilis str. 168]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=949176 WFE12_RS19180 WP_003219701.1 3646018..3646707(-) (degU) [Bacillus subtilis subsp. subtilis str. 168]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1