Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   WFE12_RS06385 Genome accession   NZ_CP147877
Coordinates   1231297..1232448 (+) Length   383 a.a.
NCBI ID   WP_003245839.1    Uniprot ID   A0AAE2VB70
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1226297..1237448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WFE12_RS06350 yjbB 1226969..1228186 (+) 1218 WP_010886478.1 MFS transporter -
  WFE12_RS06355 yjbC 1228350..1228928 (+) 579 WP_003244921.1 GNAT family N-acetyltransferase -
  WFE12_RS06360 spx 1229109..1229504 (+) 396 WP_003245483.1 transcriptional regulator Spx -
  WFE12_RS06365 yjbE 1229547..1230203 (-) 657 WP_003232944.1 TerC family protein -
  WFE12_RS06370 - 1230373..1230513 (+) 141 WP_119122854.1 hypothetical protein -
  WFE12_RS06375 mecA 1230480..1231136 (+) 657 WP_003245194.1 adaptor protein MecA Regulator
  WFE12_RS06380 - 1231131..1231253 (-) 123 WP_003245684.1 hypothetical protein -
  WFE12_RS06385 coiA 1231297..1232448 (+) 1152 WP_003245839.1 competence protein CoiA Machinery gene
  WFE12_RS06390 pepF 1232678..1234507 (+) 1830 WP_003245178.1 oligoendopeptidase F -
  WFE12_RS06395 - 1234545..1234712 (-) 168 WP_003244944.1 hypothetical protein -
  WFE12_RS06400 spxH 1235026..1235925 (-) 900 WP_003245184.1 protease adaptor protein SpxH -
  WFE12_RS06405 yjbI 1235922..1236320 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  WFE12_RS06410 cwlQ 1236575..1237309 (-) 735 WP_003245645.1 bifunctional muramidase/murein lytic transglycosylase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 44755.85 Da        Isoelectric Point: 10.0034

>NTDB_id=949131 WFE12_RS06385 WP_003245839.1 1231297..1232448(+) (coiA) [Bacillus subtilis subsp. subtilis str. 168]
MFSAVTEDGQMFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCAIDIEPESAYHLEGKRQLYVWLK
TQRASPILEPYIRTINQRPDVMARIKEHMLAVEYQCATIAPDVFQKRTEGFKQEGIIPQWIMGYSRLKRTASSFYQLSTF
HWQFINASPYRELICYCPERRSFLRLSHIIPFYTNHSYSSVQTIPIHRAGAGDLFFTEPKPSIQYSGWTKAIHRFRHKPH
RFNSKETNRLRLLFYEKRQTPFSFLPTEVFVPVRKGAVFKSPVFVWQGFLYLFMTDLGGKRAPIRFSAVLQQCKLHIHNK
NIALRSECSEECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPAGGIHSMQDLIERDRSCFIE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=949131 WFE12_RS06385 WP_003245839.1 1231297..1232448(+) (coiA) [Bacillus subtilis subsp. subtilis str. 168]
TTGTTTAGTGCTGTGACTGAAGACGGCCAAATGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGCGGAGACG
GTTCTTCTGTCCGGTATGCGGGGGAGAGCTAGCTGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGA
ACAAGTCCTGCGCCATAGACATCGAGCCGGAAAGCGCCTACCACTTAGAAGGAAAAAGACAGCTGTATGTATGGCTGAAA
ACGCAACGGGCTTCACCAATATTGGAGCCGTATATAAGGACAATCAACCAAAGACCGGACGTCATGGCAAGAATCAAGGA
GCATATGCTTGCTGTTGAATATCAATGCGCCACTATCGCTCCAGATGTCTTTCAAAAGCGGACAGAGGGCTTCAAACAAG
AAGGAATCATCCCGCAGTGGATTATGGGATACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAACTTTT
CATTGGCAGTTTATCAATGCAAGTCCATACAGAGAACTGATATGTTATTGTCCTGAAAGGCGTTCTTTTCTCCGGCTCAG
CCACATCATTCCATTCTACACAAACCATTCTTATTCCTCAGTCCAAACGATCCCTATCCATCGGGCAGGTGCAGGCGATC
TTTTTTTCACTGAACCGAAACCCTCAATTCAATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCCCAT
CGGTTTAACTCAAAGGAAACAAATCGCCTTAGGCTGCTGTTTTATGAGAAACGACAGACGCCTTTTTCTTTTCTGCCGAC
TGAAGTGTTTGTTCCTGTTAGAAAAGGGGCAGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTTTATTTGTTTA
TGACGGATCTTGGAGGTAAACGTGCGCCAATTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAATAAG
AACATTGCACTCAGGTCCGAATGCAGCGAAGAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAA
GGGATTTTTAAGGGAGACTCAGAAAGAAGTATATGTGCTGAATCAGCCTGCAGGAGGCATACACTCCATGCAGGATCTCA
TAGAAAGAGACCGCAGCTGTTTTATAGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

100

97.389

0.974