Detailed information NTG0949060

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: ACG3JK_RS07930
• Genome accession: NZ_CP171738
• Coordinates: 1546735..1547829 (-)
• Length: 364 a.a.
• NCBI ID: WP_013794542.1
• Uniprot ID: -
• Organism: Streptococcus parauberis strain DB-M23
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1541735..1552829

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACG3JK_RS07915 (ACG3JK_07915)	-	1542533..1543405 (-)	873	WP_003104058.1	YitT family protein	-
ACG3JK_RS07920 (ACG3JK_07920)	trpS	1543801..1544823 (+)	1023	WP_003107950.1	tryptophan--tRNA ligase	-
ACG3JK_RS07925 (ACG3JK_07925)	guaB	1545066..1546547 (+)	1482	WP_003107949.1	IMP dehydrogenase	-
ACG3JK_RS07930 (ACG3JK_07930)	recF	1546735..1547829 (-)	1095	WP_013794542.1	DNA replication/repair protein RecF	Machinery gene
ACG3JK_RS07935 (ACG3JK_07935)	yaaA	1547832..1548236 (-)	405	WP_003103342.1	S4 domain-containing protein YaaA	-
ACG3JK_RS07940 (ACG3JK_07940)	yfmF	1548613..1549857 (+)	1245	WP_003105281.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
ACG3JK_RS07945 (ACG3JK_07945)	yfmH	1549857..1551137 (+)	1281	WP_045407577.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
ACG3JK_RS07950 (ACG3JK_07950)	-	1551187..1552164 (+)	978	WP_003107947.1	RodZ family helix-turn-helix domain-containing protein	-
ACG3JK_RS07955 (ACG3JK_07955)	pgsA	1552177..1552719 (+)	543	WP_003105484.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 41864.98 Da
• Isoelectric Point: 8.9772

>NTDB_id=949060 ACG3JK_RS07930 WP_013794542.1 1546735..1547829(-) (recF) [Streptococcus parauberis strain DB-M23]
MWLKELTLNHFRNYNDLNINFSEGLNIFIGNNAQGKTNILEAIYFIALTRSHRTRSDKELIQFSTDRLSIEGKLNRLSGN
ISLEINLSDKGRITKINSLKQAKLSEYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSDLSNYNHILKQR
NAYLKAARTIDFDFLVVLDQQLSYYGSRVIQQRIQFIADLEKEADAHHQAISNELESLQIKYISSIDTSQSQLIQKKFME
QLERNRQRDIFRKNTSIGPHRDDIEFYINNMNANFASQGQHRSLILSIKMAEVSLMKILTGDNPILLLDDVMSELDNTRQ
TKLIETVIQENVQTFITTTSLEHLLQLPKTLKTFHVTSGTIKAD

Nucleotide

• Length: 1095 bp

>NTDB_id=949060 ACG3JK_RS07930 WP_013794542.1 1546735..1547829(-) (recF) [Streptococcus parauberis strain DB-M23]
ATGTGGTTAAAGGAATTAACACTAAATCACTTTAGAAATTATAATGACTTAAATATAAATTTTTCAGAGGGACTAAACAT
CTTTATAGGAAACAATGCCCAAGGAAAAACGAACATCTTAGAAGCTATCTATTTTATTGCCTTAACTAGAAGTCATCGCA
CAAGAAGTGATAAAGAATTAATCCAGTTTTCAACTGATCGTTTATCTATTGAAGGAAAATTAAATCGCCTCTCAGGTAAT
ATCAGTTTAGAAATTAATTTATCTGATAAAGGTCGAATAACAAAGATTAATTCATTAAAACAAGCAAAACTTTCTGAATA
TATAGGTACAATGATGGTAGTACTCTTTGCTCCTGAAGATTTACAATTAGTTAAAGGCGCTCCTAGTCTTCGAAGAAAGT
TTATTGATATTGATTTAGGTCAAATTAAACCTGTTTATCTATCTGACTTGTCGAATTATAACCATATTTTAAAACAAAGA
AACGCTTATTTAAAAGCTGCTAGAACAATTGATTTTGACTTTCTAGTAGTTTTGGATCAACAATTATCATATTATGGTAG
CCGTGTTATTCAGCAAAGAATTCAATTCATAGCTGATCTTGAAAAAGAAGCAGATGCTCATCATCAGGCAATATCAAATG
AACTAGAAAGTTTACAAATTAAATATATTTCTAGCATTGATACAAGTCAAAGTCAACTTATTCAAAAAAAATTCATGGAG
CAACTTGAAAGAAATCGTCAACGTGATATTTTTAGAAAGAATACGAGTATTGGCCCACATAGAGATGACATTGAATTTTA
TATAAATAATATGAATGCAAATTTTGCAAGCCAAGGTCAACATCGAAGCTTAATTTTATCCATAAAGATGGCTGAAGTGA
GTTTAATGAAAATCTTGACTGGAGATAATCCAATACTACTGTTAGATGATGTTATGAGTGAATTAGACAATACAAGACAA
ACAAAATTAATTGAGACTGTCATTCAAGAAAATGTTCAAACTTTTATTACTACTACTAGTTTGGAACACCTCTTGCAACT
TCCAAAAACTTTAAAAACTTTTCATGTAACTAGTGGAACCATTAAGGCAGACTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-360)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	61.003	98.626	0.602
recF	Bacillus subtilis subsp. subtilis str. 168	45.272	95.879	0.434