Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/blpR   Type   Regulator
Locus tag   ACG3JK_RS04870 Genome accession   NZ_CP171738
Coordinates   996421..997182 (-) Length   253 a.a.
NCBI ID   WP_003106320.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M23     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 991421..1002182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JK_RS04845 (ACG3JK_04845) - 991664..993166 (-) 1503 WP_037619776.1 helicase HerA-like domain-containing protein -
  ACG3JK_RS04850 (ACG3JK_04850) - 993287..993943 (-) 657 WP_003103741.1 YitT family protein -
  ACG3JK_RS04855 (ACG3JK_04855) coaE 993951..994541 (-) 591 WP_013793717.1 dephospho-CoA kinase -
  ACG3JK_RS04860 (ACG3JK_04860) mutM 994534..995358 (-) 825 WP_037619770.1 DNA-formamidopyrimidine glycosylase -
  ACG3JK_RS04865 (ACG3JK_04865) - 995714..996001 (-) 288 WP_003106321.1 bacteriocin immunity protein -
  ACG3JK_RS04870 (ACG3JK_04870) comE/blpR 996421..997182 (-) 762 WP_003106320.1 response regulator transcription factor Regulator
  ACG3JK_RS04875 (ACG3JK_04875) - 997469..998101 (-) 633 WP_003106318.1 ATP-binding cassette domain-containing protein -
  ACG3JK_RS04880 (ACG3JK_04880) - 998704..999495 (-) 792 WP_045406685.1 hypothetical protein -
  ACG3JK_RS04885 (ACG3JK_04885) - 999553..999942 (-) 390 WP_013793714.1 hypothetical protein -
  ACG3JK_RS04890 (ACG3JK_04890) - 1000087..1000563 (-) 477 WP_003106309.1 NUDIX hydrolase -
  ACG3JK_RS04895 (ACG3JK_04895) era 1000748..1001647 (-) 900 WP_003106308.1 GTPase Era -
  ACG3JK_RS04900 (ACG3JK_04900) - 1001661..1002068 (-) 408 WP_003105517.1 diacylglycerol kinase family protein -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29691.05 Da        Isoelectric Point: 6.8700

>NTDB_id=949029 ACG3JK_RS04870 WP_003106320.1 996421..997182(-) (comE/blpR) [Streptococcus parauberis strain DB-M23]
MNIFVLEDVIRQQLHMETVIEKVLNQNNWFCNQLEFFGRGEQLLDHVNEKGSHQLFFLDIEIHQNKIKGLEIAKSIREND
PYATIVFVSNHVELIPLVFKYQIKALDLINKKLAYEEFEERIYATIKHVQNNNNCDLSDECFIFDSKQAHIHIPYYQLLF
VDTSGASHNLILHSLYGQIEIKGTLLQVLESEPRLFRCHRSFVINLSNVVSIDKQNRIITFKNGSKCDISRDKVKEVIKG
RTYYSCFFQGKDY

Nucleotide


Download         Length: 762 bp        

>NTDB_id=949029 ACG3JK_RS04870 WP_003106320.1 996421..997182(-) (comE/blpR) [Streptococcus parauberis strain DB-M23]
ATGAATATATTCGTATTAGAAGATGTCATTCGTCAGCAGTTACATATGGAGACAGTAATCGAAAAAGTTCTCAATCAAAA
TAATTGGTTTTGTAACCAATTAGAATTTTTTGGACGAGGTGAGCAACTATTAGATCATGTCAATGAAAAAGGTAGTCATC
AATTATTTTTTCTTGACATTGAAATTCATCAAAACAAGATAAAAGGTCTCGAGATTGCTAAATCAATTAGGGAGAATGAT
CCTTACGCAACAATTGTTTTTGTTTCAAATCATGTCGAATTGATACCTCTTGTTTTTAAATATCAAATCAAAGCATTAGA
TTTGATTAATAAAAAGTTGGCTTATGAGGAATTTGAAGAGCGAATTTATGCAACAATTAAACATGTTCAGAATAATAACA
ATTGTGACTTATCCGATGAATGTTTCATTTTTGATTCAAAACAAGCTCATATACATATTCCTTATTATCAGCTGTTATTT
GTTGATACTTCAGGAGCATCCCATAATCTTATTTTACATTCTTTATATGGACAAATTGAGATCAAAGGAACCTTATTACA
GGTATTAGAAAGTGAACCAAGATTATTTCGGTGTCATAGATCATTTGTAATTAATTTAAGTAATGTGGTAAGTATTGATA
AACAAAATAGAATTATCACATTCAAAAATGGTAGCAAATGTGATATTTCTAGAGACAAAGTTAAAGAAGTCATAAAAGGA
AGAACGTATTATTCTTGTTTTTTTCAAGGAAAAGATTATTGA

Domains

Predicted by InterProScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(16-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

41.597

94.071

0.391
  comE/comE1 Streptococcus equinus JB1

39.916

94.071

0.375