Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   WDW95_RS01460 Genome accession   NZ_CP147857
Coordinates   278374..279162 (+) Length   262 a.a.
NCBI ID   WP_061773740.1    Uniprot ID   A0A2A5SID2
Organism   Lactococcus raffinolactis strain APC3967     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 273374..284162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDW95_RS01430 - 274241..274507 (+) 267 WP_061773735.1 IreB family regulatory phosphoprotein -
  WDW95_RS01435 ruvX 274504..274929 (+) 426 WP_096039966.1 Holliday junction resolvase RuvX -
  WDW95_RS01440 - 274950..275273 (+) 324 WP_061773737.1 DUF1292 domain-containing protein -
  WDW95_RS01445 - 275367..275648 (-) 282 WP_368651656.1 hypothetical protein -
  WDW95_RS01450 - 275645..276604 (-) 960 WP_061773739.1 MFS transporter -
  WDW95_RS01455 - 276838..278268 (+) 1431 WP_368651657.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  WDW95_RS01460 codY 278374..279162 (+) 789 WP_061773740.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  WDW95_RS01465 aspS 279585..281348 (+) 1764 WP_061773741.1 aspartate--tRNA ligase -
  WDW95_RS01470 gatC 281663..281956 (+) 294 WP_003140469.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  WDW95_RS01475 gatA 281959..283407 (+) 1449 WP_061773742.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  WDW95_RS01480 - 283410..284015 (+) 606 WP_061773743.1 NUDIX hydrolase N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 28809.99 Da        Isoelectric Point: 4.8340

>NTDB_id=948977 WDW95_RS01460 WP_061773740.1 278374..279162(+) (codY) [Lactococcus raffinolactis strain APC3967]
MTTLLEKTRRITAILQEGLNNSSEELPYNGLSERLSAVIDCNSVVIDGKGVVLGYAMPYKTNNDRVEAMFDERKLSDEYV
QVASRTYDTEANLPADAMLSLYPQEVVKDHPHGKTTVAPIYGSGLRLGTFIIWRNEEAFSDDDLVLVELATTVIGIQLSN
LQIEKMEENIRKAAAVNMAVSTLSYSEMKAVKAILEELGGIEGRLTASVIADKIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVVNSGIYEKLEGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=948977 WDW95_RS01460 WP_061773740.1 278374..279162(+) (codY) [Lactococcus raffinolactis strain APC3967]
ATGACTACTTTATTAGAAAAAACAAGAAGAATCACGGCGATTTTGCAAGAAGGACTCAATAATTCTAGCGAAGAATTACC
GTACAATGGCTTATCAGAACGCTTATCAGCGGTAATTGATTGTAACTCTGTTGTCATCGATGGCAAGGGTGTTGTGCTTG
GCTATGCCATGCCATACAAGACAAACAACGACCGTGTTGAAGCGATGTTTGATGAACGCAAGTTATCAGATGAGTACGTT
CAAGTCGCATCACGTACTTATGATACTGAAGCTAACTTACCTGCAGATGCGATGCTATCACTTTATCCACAAGAAGTTGT
CAAAGATCACCCGCATGGTAAAACAACAGTTGCACCGATTTATGGTAGTGGCTTGCGTTTAGGAACATTTATCATCTGGC
GCAATGAAGAAGCGTTTAGTGATGATGATCTTGTCTTGGTTGAATTGGCAACAACAGTTATCGGGATTCAATTGTCAAAT
CTTCAAATCGAGAAGATGGAAGAAAACATCCGTAAGGCGGCAGCAGTTAATATGGCAGTTAGCACACTTTCTTATTCTGA
AATGAAAGCTGTTAAAGCGATTCTTGAAGAATTAGGTGGTATCGAAGGCCGTTTGACAGCTTCAGTAATTGCTGATAAAA
TTGGTATTACACGTTCAGTGATCGTGAATGCTCTTCGTAAGCTAGAGTCAGCTGGGATTATCGAATCTCGTTCACTTGGC
ATGAAGGGAACTTACCTTAAAGTTGTCAATTCAGGTATTTATGAAAAACTTGAAGGTCGCAACTTTTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A5SID2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

69.847

100

0.698
  codY Bacillus subtilis subsp. subtilis str. 168

45.882

97.328

0.447