Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACG3JL_RS05440 Genome accession   NZ_CP171737
Coordinates   1054851..1056632 (-) Length   593 a.a.
NCBI ID   WP_003108299.1    Uniprot ID   A0ABN0IS04
Organism   Streptococcus parauberis strain DB-M18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1049851..1061632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JL_RS05420 (ACG3JL_05420) rpiA 1050140..1050820 (-) 681 WP_003107052.1 ribose-5-phosphate isomerase RpiA -
  ACG3JL_RS05425 (ACG3JL_05425) mnmE 1051142..1052518 (+) 1377 WP_041828708.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE -
  ACG3JL_RS05430 (ACG3JL_05430) pepV 1052630..1054033 (-) 1404 WP_003103644.1 dipeptidase PepV -
  ACG3JL_RS05435 (ACG3JL_05435) - 1054154..1054756 (-) 603 WP_003107056.1 nitroreductase family protein -
  ACG3JL_RS05440 (ACG3JL_05440) uvrC 1054851..1056632 (-) 1782 WP_003108299.1 excinuclease ABC subunit UvrC Machinery gene
  ACG3JL_RS05445 (ACG3JL_05445) - 1056823..1057989 (-) 1167 WP_013794046.1 sugar MFS transporter -
  ACG3JL_RS05450 (ACG3JL_05450) - 1057996..1058799 (-) 804 WP_013794047.1 Cof-type HAD-IIB family hydrolase -
  ACG3JL_RS05455 (ACG3JL_05455) - 1058869..1060242 (-) 1374 WP_013794048.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  ACG3JL_RS05460 (ACG3JL_05460) - 1060331..1061020 (-) 690 WP_013794049.1 YjjG family noncanonical pyrimidine nucleotidase -

Sequence

Protein


Download         Length: 593 a.a.        Molecular weight: 68311.68 Da        Isoelectric Point: 9.3912

>NTDB_id=948938 ACG3JL_RS05440 WP_003108299.1 1054851..1056632(-) (uvrC) [Streptococcus parauberis strain DB-M18]
MNDLIKHKLELLPDSPGCYLHKNKDGKIIYVGKAKNLKNRVRSYFRGSHDTKTELLVSEIADFEFIVTGSNTEALLLEIN
LIQENMPRYNIKLKDDKSYPFIKITNEHFPRLLITRQIRKNDGLYFGPYPDSYTANEVKKLLDRIFPFKKCTNPVNKVCF
YYHIGQCNAHTICQTDKAYWDGLVEDVKLFLNGKDDKIIDGLKRKMKSASEELEFERAAEYRDLISGIATLRTKQRVMSK
DLMDRDIFGYYVEKGWMCVQVFFVRQGKLIQRDVNMFPYYNEEEDDFLTYMGQFYQDKRHFLPKEVFIPANIDHELVEAI
VPSKIIKPQRGEKKQLVALATKNARVSLQQKFDLLEKDLKKTKGAIDNLGELMAIPTPIRIEAFDNSNIQGTSPVAAMVV
FVDGKPSKKDYRKFKIKTVTGPDDYASMREVISRRYSRVQKDNLQAPDLIIIDGGQGQVNIAKDVIQNQLGLSIPVAGLQ
KNDKHQTQELLFGDPLEVIDLPRNSEEFFLLHRIQDEVHRFAITFHRQVRSKNSFSSKLDNIEGLGPKRKQTLLKHFKNM
TAIGNATVDEIRALGIPEKVAENLLASFNQKND

Nucleotide


Download         Length: 1782 bp        

>NTDB_id=948938 ACG3JL_RS05440 WP_003108299.1 1054851..1056632(-) (uvrC) [Streptococcus parauberis strain DB-M18]
ATGAATGATCTGATTAAACATAAGCTGGAATTGCTTCCTGATAGTCCAGGATGTTATCTCCACAAAAATAAAGACGGCAA
AATAATCTATGTTGGAAAAGCTAAAAATTTAAAGAATCGGGTTCGCTCTTATTTTAGAGGAAGTCATGATACCAAGACTG
AATTATTGGTTTCAGAAATTGCTGATTTTGAATTCATTGTAACGGGCTCAAATACAGAAGCTCTTCTTTTAGAAATTAAC
TTGATACAAGAGAACATGCCTCGATATAACATCAAGTTAAAGGATGACAAGTCTTATCCGTTTATCAAGATTACTAATGA
GCATTTCCCGCGTCTATTGATTACTCGCCAAATTCGTAAGAATGATGGGCTCTATTTTGGCCCTTATCCTGATTCTTATA
CAGCAAATGAAGTCAAAAAGCTTTTGGACCGAATTTTCCCTTTTAAGAAATGTACTAACCCTGTAAACAAAGTTTGCTTT
TATTATCACATCGGCCAGTGTAATGCCCATACCATTTGTCAAACTGATAAAGCTTACTGGGATGGCCTGGTGGAAGACGT
CAAACTGTTCTTGAATGGTAAAGACGACAAAATCATTGATGGTCTAAAAAGAAAGATGAAGTCAGCTTCCGAGGAATTGG
AGTTTGAACGAGCTGCTGAGTATCGTGATTTGATTTCGGGAATTGCTACGCTGAGAACCAAACAACGAGTGATGAGTAAA
GACTTAATGGACAGAGACATTTTTGGCTATTACGTCGAAAAAGGCTGGATGTGCGTTCAAGTTTTCTTTGTTAGACAGGG
GAAATTAATCCAAAGAGATGTTAATATGTTCCCTTACTATAACGAGGAAGAAGATGATTTCTTAACTTATATGGGGCAAT
TTTACCAAGATAAAAGACATTTCCTACCCAAGGAAGTCTTCATTCCTGCTAACATTGACCACGAACTGGTAGAAGCTATT
GTCCCGAGCAAGATAATTAAACCACAACGTGGTGAGAAGAAGCAGCTAGTCGCCTTAGCAACCAAGAATGCACGTGTCTC
CCTTCAACAAAAATTTGATTTGCTGGAAAAAGATTTGAAAAAGACAAAAGGGGCTATTGATAATCTAGGTGAGTTAATGG
CTATTCCAACACCTATTCGAATTGAAGCATTTGATAACTCGAATATTCAAGGAACAAGTCCAGTCGCCGCTATGGTCGTC
TTTGTCGATGGAAAACCAAGTAAAAAAGATTATCGAAAATTCAAAATCAAAACAGTCACTGGACCAGATGACTATGCCAG
TATGCGGGAAGTTATCTCCAGACGTTATAGTCGGGTTCAAAAGGACAACTTACAAGCTCCAGATTTAATCATCATTGATG
GAGGACAAGGGCAAGTTAATATCGCTAAGGATGTCATTCAAAATCAACTCGGCTTATCTATTCCAGTTGCTGGTTTGCAA
AAAAATGACAAGCACCAAACCCAAGAACTCTTGTTTGGTGACCCCTTGGAAGTGATTGATTTACCCCGCAATTCAGAGGA
ATTTTTCTTGCTTCATCGCATTCAAGATGAGGTTCACCGCTTTGCTATTACCTTCCATAGACAGGTTCGCAGTAAGAATT
CTTTCTCCTCAAAATTGGACAATATTGAGGGGCTTGGTCCTAAGCGCAAGCAAACCTTGCTCAAACATTTTAAGAATATG
ACAGCTATTGGTAATGCCACTGTAGATGAGATAAGGGCCTTGGGGATTCCAGAAAAAGTTGCCGAAAATTTACTAGCTAG
TTTTAATCAAAAAAATGACTAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(375-523)

UvrB/uvrC motif (UVR)

(196-228)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

74.874

100

0.749
  uvrC Streptococcus pneumoniae R6

74.536

100

0.745
  uvrC Streptococcus pneumoniae D39

74.536

100

0.745