Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ACG3JE_RS00480 Genome accession   NZ_CP171736
Coordinates   80395..80802 (+) Length   135 a.a.
NCBI ID   WP_243619590.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M17     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 75395..85802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JE_RS00450 (ACG3JE_00450) - 75791..77647 (+) 1857 WP_013794401.1 DUF859 family phage minor structural protein -
  ACG3JE_RS00455 (ACG3JE_00455) - 77696..78034 (+) 339 WP_013794400.1 DUF1366 domain-containing protein -
  ACG3JE_RS00460 (ACG3JE_00460) - 78097..78246 (+) 150 WP_259966511.1 hypothetical protein -
  ACG3JE_RS00465 (ACG3JE_00465) - 78250..78714 (+) 465 WP_013794399.1 phage holin family protein -
  ACG3JE_RS00470 (ACG3JE_00470) - 78707..79432 (+) 726 WP_013794398.1 peptidoglycan amidohydrolase family protein -
  ACG3JE_RS00475 (ACG3JE_00475) comGC 80085..80405 (+) 321 WP_013794397.1 competence type IV pilus major pilin ComGC Machinery gene
  ACG3JE_RS00480 (ACG3JE_00480) comGD 80395..80802 (+) 408 WP_243619590.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACG3JE_RS00485 (ACG3JE_00485) comGE 80774..81073 (+) 300 WP_259966510.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACG3JE_RS00490 (ACG3JE_00490) comGF 81051..81299 (+) 249 WP_311981289.1 hypothetical protein Machinery gene
  ACG3JE_RS00495 (ACG3JE_00495) comGF/cglF 81272..81487 (+) 216 WP_311981290.1 ComGF family competence protein Machinery gene
  ACG3JE_RS00500 (ACG3JE_00500) comGG 81465..81962 (+) 498 WP_003108640.1 competence type IV pilus minor pilin ComGG -
  ACG3JE_RS00505 (ACG3JE_00505) comGH 82069..83025 (+) 957 WP_003103712.1 class I SAM-dependent methyltransferase Machinery gene
  ACG3JE_RS00510 (ACG3JE_00510) - 83081..84274 (+) 1194 WP_003108638.1 acetate kinase -
  ACG3JE_RS00515 (ACG3JE_00515) - 84385..84597 (+) 213 WP_003108636.1 helix-turn-helix transcriptional regulator -
  ACG3JE_RS00520 (ACG3JE_00520) - 84590..85042 (+) 453 WP_003108634.1 hypothetical protein -
  ACG3JE_RS00525 (ACG3JE_00525) - 85051..85704 (+) 654 WP_013794395.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15354.77 Da        Isoelectric Point: 9.6000

>NTDB_id=948802 ACG3JE_RS00480 WP_243619590.1 80395..80802(+) (comGD) [Streptococcus parauberis strain DB-M17]
MLNKEVSAFTYFESLLCLVITCFSVIILTTSVGTVFEKVTNNLFYIEFENFYRHSQKISILKRVAGTMVFKEKSISYHNE
TITLPDTIRLGFVNKVKINQFGGNHSLAKINFISSDETVTYTLNLGSGTYKKTKN

Nucleotide


Download         Length: 408 bp        

>NTDB_id=948802 ACG3JE_RS00480 WP_243619590.1 80395..80802(+) (comGD) [Streptococcus parauberis strain DB-M17]
ATGTTAAATAAGGAAGTATCAGCGTTTACCTATTTTGAATCTTTACTATGTCTAGTAATTACTTGTTTTTCAGTTATTAT
ATTGACAACAAGTGTGGGTACAGTATTTGAAAAAGTTACAAATAATCTATTCTATATTGAATTTGAAAATTTTTATCGGC
ATAGTCAAAAAATTTCCATACTAAAACGGGTTGCAGGAACAATGGTATTTAAGGAAAAATCAATTTCATATCACAATGAA
ACAATTACCTTACCAGATACAATCAGACTTGGATTTGTTAACAAGGTAAAGATAAACCAGTTTGGTGGAAATCATTCCCT
TGCTAAAATAAATTTTATTAGTTCGGATGAAACTGTTACTTATACTCTAAATTTAGGAAGTGGTACTTATAAAAAAACAA
AAAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA140

40.458

97.037

0.393
  comGD Streptococcus mutans UA159

40.458

97.037

0.393