Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   ACG3JM_RS06200 Genome accession   NZ_CP171735
Coordinates   1241007..1242041 (-) Length   344 a.a.
NCBI ID   WP_013793667.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M11     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1236007..1247041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JM_RS06165 (ACG3JM_06165) - 1236794..1237096 (-) 303 WP_003103628.1 YlxQ-related RNA-binding protein -
  ACG3JM_RS06170 (ACG3JM_06170) rnpM 1237089..1237385 (-) 297 WP_003104517.1 RNase P modulator RnpM -
  ACG3JM_RS06175 (ACG3JM_06175) nusA 1237401..1238555 (-) 1155 WP_013793668.1 transcription termination factor NusA -
  ACG3JM_RS06180 (ACG3JM_06180) rimP 1238644..1239126 (-) 483 WP_003102760.1 ribosome maturation factor RimP -
  ACG3JM_RS06190 (ACG3JM_06190) trmB 1239520..1240155 (-) 636 WP_003107546.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ACG3JM_RS06195 (ACG3JM_06195) ccrZ 1240155..1240946 (-) 792 WP_003107547.1 cell cycle regulator CcrZ -
  ACG3JM_RS06200 (ACG3JM_06200) pptB 1241007..1242041 (-) 1035 WP_013793667.1 ABC transporter permease Regulator
  ACG3JM_RS06205 (ACG3JM_06205) pptA 1242044..1242769 (-) 726 WP_003105648.1 ABC transporter ATP-binding protein Regulator
  ACG3JM_RS06210 (ACG3JM_06210) - 1243031..1243450 (+) 420 WP_003103589.1 HIT family protein -
  ACG3JM_RS06215 (ACG3JM_06215) - 1243447..1243749 (+) 303 WP_003104696.1 hypothetical protein -
  ACG3JM_RS06220 (ACG3JM_06220) brpA 1243782..1245071 (-) 1290 WP_013793666.1 biofilm formation/cell division transcriptional regulator BrpA -
  ACG3JM_RS06225 (ACG3JM_06225) - 1245080..1245604 (-) 525 WP_013793665.1 GNAT family N-acetyltransferase -
  ACG3JM_RS06230 (ACG3JM_06230) tsaE 1245591..1246040 (-) 450 WP_003103132.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40041.82 Da        Isoelectric Point: 9.9510

>NTDB_id=948752 ACG3JM_RS06200 WP_013793667.1 1241007..1242041(-) (pptB) [Streptococcus parauberis strain DB-M11]
MEELFKKRKQDFQKLHRKYLPYVLNDHFVLVLVFLLGYVLYQYSQLLRHFPENHWPIIICLILLTFFLLQVGSVATYLEE
ADRQFLLAKENQLITYIDRAGRHSFVSGTVIQSVCLALLFPILARLGLSLTLFVLMLVLLAGLKWLIQKRKVAALMADSG
LNWDASIVIEKRRKQQILKFYSLFVNVKGVSTSVKERSYLNPLLRTVEKKSGSHWLNLFARAFLRSSDYLGLYIRLTFLA
LLSLIFISNDYLSMALALIFDYLLLFQLLSLYHHFDYHYLSILYPEDSKQKKADLLKLLRGVSLVLLIIEIGFTGNFINA
VIMTIFFGVMAYLYLPYKLKNIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=948752 ACG3JM_RS06200 WP_013793667.1 1241007..1242041(-) (pptB) [Streptococcus parauberis strain DB-M11]
ATGGAAGAATTGTTTAAAAAACGAAAGCAGGACTTTCAAAAACTTCATCGTAAGTATCTCCCCTATGTTCTGAATGATCA
TTTTGTGCTTGTACTAGTCTTTTTATTAGGCTATGTTTTATATCAATATAGCCAACTCTTGCGCCATTTTCCTGAAAATC
ACTGGCCAATTATTATTTGTCTAATTTTATTAACCTTCTTTTTATTACAGGTTGGCTCTGTGGCGACTTATTTGGAAGAG
GCTGACCGTCAGTTCTTGCTTGCCAAAGAAAATCAACTGATTACCTATATAGACAGAGCTGGGCGTCACTCATTTGTTAG
TGGAACTGTGATTCAAAGCGTTTGTTTAGCTCTGCTATTCCCCATCTTAGCAAGACTTGGCCTATCGCTGACGCTCTTTG
TTCTCATGTTGGTACTCTTAGCTGGTTTGAAGTGGTTGATCCAGAAAAGGAAAGTAGCTGCGCTGATGGCCGATAGTGGC
TTGAATTGGGATGCTAGTATTGTCATTGAGAAAAGACGAAAGCAACAAATTCTGAAGTTTTATTCCCTTTTTGTAAATGT
CAAGGGTGTATCCACCAGTGTAAAAGAAAGATCTTACTTAAATCCGCTTTTAAGAACTGTTGAAAAAAAATCAGGCTCAC
ATTGGCTCAATCTCTTTGCGCGTGCTTTTTTGCGAAGCTCAGATTATCTTGGTCTCTATATTAGATTAACCTTTTTAGCA
TTATTATCACTAATATTTATTAGTAATGATTATTTATCAATGGCTTTGGCGTTGATTTTTGACTACCTTTTATTATTTCA
ATTGCTGTCACTATATCATCATTTTGATTATCATTACTTATCAATTTTATATCCGGAAGATAGTAAGCAAAAGAAAGCTG
ATTTACTCAAATTATTACGAGGGGTATCTTTGGTTTTATTGATCATAGAGATTGGATTTACAGGCAATTTCATAAATGCT
GTAATCATGACTATCTTCTTTGGGGTAATGGCCTATCTCTATTTGCCTTATAAGTTAAAGAACATAATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(3-154)

Bacterial ABC transporter protein EcsB (EcsB)

(158-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.314

100

0.433
  pptB Streptococcus salivarius strain HSISS4

41.86

100

0.419