Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ACG3JI_RS05820 Genome accession   NZ_CP171734
Coordinates   1160930..1161571 (-) Length   213 a.a.
NCBI ID   WP_003107492.1    Uniprot ID   A0ABP2SXX6
Organism   Streptococcus parauberis strain DB-M9     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1155930..1166571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JI_RS05795 (ACG3JI_05795) comFA/cflA 1156022..1157326 (-) 1305 WP_045407612.1 DEAD/DEAH box helicase Machinery gene
  ACG3JI_RS05800 (ACG3JI_05800) - 1157383..1158015 (+) 633 WP_003107489.1 YigZ family protein -
  ACG3JI_RS05805 (ACG3JI_05805) cysK 1158138..1159067 (+) 930 WP_003103108.1 cysteine synthase A -
  ACG3JI_RS05810 (ACG3JI_05810) - 1159143..1159496 (-) 354 WP_003103672.1 S1 RNA-binding domain-containing protein -
  ACG3JI_RS05815 (ACG3JI_05815) - 1159496..1160896 (-) 1401 WP_045407608.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  ACG3JI_RS05820 (ACG3JI_05820) vraR 1160930..1161571 (-) 642 WP_003107492.1 response regulator transcription factor Regulator
  ACG3JI_RS05825 (ACG3JI_05825) - 1161564..1162568 (-) 1005 WP_003107494.1 sensor histidine kinase -
  ACG3JI_RS05830 (ACG3JI_05830) liaF 1162565..1163260 (-) 696 WP_037620823.1 cell wall-active antibiotics response protein LiaF -
  ACG3JI_RS05835 (ACG3JI_05835) pknB 1163411..1165150 (-) 1740 WP_003107495.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  ACG3JI_RS05840 (ACG3JI_05840) - 1165150..1165890 (-) 741 WP_003102848.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23957.60 Da        Isoelectric Point: 4.7106

>NTDB_id=948646 ACG3JI_RS05820 WP_003107492.1 1160930..1161571(-) (vraR) [Streptococcus parauberis strain DB-M9]
MDKIRVILVDDHEMVRLGLKSFLNMQKDIEVIGEASNGRQGIDLALELRPDVLVMDLVMPEMGGVEATLDILSKWTEAKV
LVLTSYLDNEKIYPVIDAGAKGYMLKTSSAAEILNAIRKVAKGQLAIETEVDKKIKEHDKNPELHEELTAREFDILYLLA
KGYDNQTIADELFISLKTVKTHVSNILSKLDVDDRTQAVVYAFQHHIVPQDDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=948646 ACG3JI_RS05820 WP_003107492.1 1160930..1161571(-) (vraR) [Streptococcus parauberis strain DB-M9]
ATGGATAAAATACGTGTCATATTAGTTGATGACCATGAGATGGTGCGTTTAGGCTTAAAAAGCTTCTTAAATATGCAAAA
AGACATAGAAGTTATTGGTGAAGCATCTAATGGTCGCCAAGGCATTGATTTAGCTTTAGAACTACGTCCAGATGTTTTAG
TCATGGATTTAGTGATGCCTGAAATGGGTGGAGTTGAAGCAACATTAGATATTCTTTCAAAATGGACAGAAGCTAAAGTT
TTAGTACTGACTTCCTATCTTGATAATGAGAAAATCTATCCAGTTATTGATGCCGGAGCCAAAGGTTATATGTTAAAGAC
TTCAAGTGCTGCAGAAATCTTAAATGCAATTAGAAAAGTAGCAAAAGGCCAACTAGCTATCGAGACAGAAGTTGACAAAA
AAATAAAAGAGCATGATAAAAATCCAGAATTGCATGAGGAGTTAACAGCTCGGGAATTTGATATTTTATATCTGTTAGCC
AAAGGTTATGATAATCAAACGATTGCTGATGAGTTATTTATTTCATTAAAAACTGTAAAAACACATGTTTCAAATATTCT
TTCTAAATTGGACGTCGACGATCGAACACAAGCTGTAGTCTACGCATTCCAACACCATATAGTGCCACAAGATGACAATT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(148-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.913

96.714

0.512
  degU Bacillus subtilis subsp. subtilis str. 168

35.586

100

0.371