Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   V8J88_RS21230 Genome accession   NZ_CP147776
Coordinates   5193064..5194584 (-) Length   506 a.a.
NCBI ID   WP_338846271.1    Uniprot ID   -
Organism   Massilia sp. W12     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5188064..5199584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8J88_RS21195 (V8J88_21195) - 5188623..5188910 (-) 288 WP_338846263.1 DUF167 domain-containing protein -
  V8J88_RS21200 (V8J88_21200) - 5188928..5189488 (-) 561 WP_338846264.1 YggT family protein -
  V8J88_RS21205 (V8J88_21205) - 5189598..5190251 (-) 654 WP_338846265.1 hypothetical protein -
  V8J88_RS21210 (V8J88_21210) - 5190862..5191293 (-) 432 WP_338846266.1 DUF1801 domain-containing protein -
  V8J88_RS21215 (V8J88_21215) - 5191314..5191853 (-) 540 WP_338846267.1 hypothetical protein -
  V8J88_RS21220 (V8J88_21220) - 5191939..5192313 (-) 375 WP_338846269.1 hypothetical protein -
  V8J88_RS21225 (V8J88_21225) ampD 5192478..5193077 (-) 600 WP_338846270.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  V8J88_RS21230 (V8J88_21230) pilR 5193064..5194584 (-) 1521 WP_338846271.1 sigma-54 dependent transcriptional regulator Regulator
  V8J88_RS21235 (V8J88_21235) - 5194581..5196308 (-) 1728 WP_338846272.1 ATP-binding protein -
  V8J88_RS21240 (V8J88_21240) - 5196305..5196556 (-) 252 WP_338846273.1 PP0621 family protein -
  V8J88_RS21245 (V8J88_21245) ccsA 5196553..5197353 (-) 801 WP_338846274.1 cytochrome c biogenesis protein CcsA -
  V8J88_RS21250 (V8J88_21250) - 5197455..5198351 (-) 897 WP_338846275.1 recombination-associated protein RdgC -
  V8J88_RS21255 (V8J88_21255) - 5198576..5199319 (-) 744 WP_338846276.1 PhaM family polyhydroxyalkanoate granule multifunctional regulatory protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54631.23 Da        Isoelectric Point: 4.8824

>NTDB_id=948546 V8J88_RS21230 WP_338846271.1 5193064..5194584(-) (pilR) [Massilia sp. W12]
MTAPRVLVVDDEQDLRDLLEITILRMGLDVDSAEDLQSARKLLAKHEYALVLTDMRLPDGMGIELVSEISSKFKNTPVAV
VTAYGSAENAVVALKAGAFDYVTKPVALDQLRLLVQSALGLGQNKSAPEAAPGSRLIGASRAMQDLRAQIARLARSMAPI
SITGESGSGKELAAREIHAQSARANKPFIAVNCGAIPETLMEAEFFGYRKGAFTGASDERDGFFQAANGGTLMLDEVADL
PLPMQVKLLRAIQERRVRKIGATAEEPVDVRIISATHQNLAEWVEKGKFRQDLFYRLNVIELSLPPLRERLDDLGVLTEN
ILQRLGAAHGVQGRLSEAALHALSDYSFPGNVRELENILERALAFANDGVIEVSDLALKPGRSLSDMPQRPADIAGDGSL
LHSAPPAAAPAAPAPAETPPPAAPPQAETQAAGGVQDVDGIAQAVAEFWRRKGQDLPSFLDQVEKQIIISALEQTTYNRT
AAAELLGISFRQLRYQVQRLEIHDPD

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=948546 V8J88_RS21230 WP_338846271.1 5193064..5194584(-) (pilR) [Massilia sp. W12]
ATGACAGCTCCACGGGTTTTGGTAGTTGACGATGAGCAGGATTTGCGCGATCTGCTCGAAATCACCATCTTGCGCATGGG
TTTGGATGTGGACAGCGCAGAGGATTTGCAGAGCGCGCGCAAGCTGCTGGCCAAACATGAATATGCGCTGGTGCTGACCG
ATATGCGTCTGCCGGATGGCATGGGAATCGAGCTGGTCAGCGAAATCAGCAGCAAATTTAAAAATACCCCGGTTGCAGTG
GTGACCGCATATGGCAGTGCGGAAAATGCGGTGGTGGCCTTGAAAGCCGGCGCATTTGATTATGTCACCAAGCCGGTGGC
GCTGGATCAGTTGCGTCTGCTGGTGCAATCAGCCCTGGGATTGGGACAGAATAAAAGCGCGCCGGAAGCGGCTCCCGGTT
CGCGCCTGATCGGCGCTTCGCGCGCGATGCAGGATTTGCGCGCGCAAATCGCGCGCCTGGCGCGCTCGATGGCGCCGATT
TCCATCACTGGCGAATCGGGCAGCGGGAAAGAGCTGGCGGCGCGCGAAATCCATGCGCAAAGCGCGCGCGCCAACAAGCC
TTTCATCGCCGTCAACTGCGGCGCGATCCCCGAAACGCTGATGGAAGCCGAATTTTTCGGCTACCGCAAAGGCGCTTTCA
CCGGCGCCAGCGATGAGCGCGACGGCTTTTTTCAGGCTGCCAATGGCGGCACCCTGATGCTGGATGAAGTGGCCGATTTG
CCGCTGCCTATGCAAGTCAAACTGCTGCGCGCGATTCAAGAGCGGCGCGTGCGTAAAATCGGCGCCACGGCGGAAGAGCC
GGTGGACGTGCGCATCATCAGCGCGACCCATCAAAACCTGGCGGAATGGGTGGAAAAAGGCAAGTTCCGGCAAGACTTGT
TTTACCGCTTGAATGTGATTGAACTCAGTCTGCCGCCATTGCGTGAGCGGCTCGACGATCTGGGCGTGCTGACCGAAAAT
ATTTTGCAGCGCCTGGGCGCCGCGCATGGTGTGCAAGGCCGCTTGTCCGAAGCGGCTTTGCATGCCTTGTCGGATTACAG
TTTTCCGGGCAATGTGCGGGAATTGGAAAATATCCTTGAGCGCGCTCTGGCGTTTGCCAATGATGGCGTGATTGAAGTCT
CCGATCTGGCGTTAAAACCGGGCCGCAGCTTAAGCGACATGCCGCAGCGTCCTGCCGATATCGCCGGCGATGGCAGCTTA
TTGCACAGCGCGCCGCCCGCCGCCGCACCTGCCGCTCCCGCGCCAGCCGAAACGCCGCCGCCCGCCGCGCCGCCGCAGGC
CGAGACCCAGGCGGCAGGCGGGGTGCAGGATGTGGATGGCATCGCGCAGGCGGTGGCCGAATTCTGGCGACGCAAGGGGC
AGGATTTGCCCAGTTTTCTGGATCAGGTGGAAAAGCAGATCATCATCAGCGCGCTGGAACAAACCACCTACAACCGCACC
GCAGCGGCGGAATTGCTGGGCATCAGTTTCCGCCAATTGCGCTATCAAGTGCAAAGGCTGGAAATCCATGATCCCGACTG
A

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-302)

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory protein, Fis family (HTH_8)

(460-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

49.105

99.407

0.488
  pilR Acinetobacter baumannii strain A118

42.4

98.814

0.419