Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ACG3JJ_RS00985 Genome accession   NZ_CP171733
Coordinates   193129..193572 (-) Length   147 a.a.
NCBI ID   WP_307877782.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 188129..198572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JJ_RS00945 (ACG3JJ_00945) - 188226..188879 (-) 654 WP_013794395.1 CPBP family intramembrane glutamic endopeptidase -
  ACG3JJ_RS00950 (ACG3JJ_00950) - 188888..189340 (-) 453 WP_003108634.1 hypothetical protein -
  ACG3JJ_RS00955 (ACG3JJ_00955) - 189333..189545 (-) 213 WP_003108636.1 helix-turn-helix transcriptional regulator -
  ACG3JJ_RS00960 (ACG3JJ_00960) - 189656..190849 (-) 1194 WP_003108638.1 acetate kinase -
  ACG3JJ_RS00965 (ACG3JJ_00965) comGH 190905..191861 (-) 957 WP_003103712.1 class I SAM-dependent methyltransferase Machinery gene
  ACG3JJ_RS00970 (ACG3JJ_00970) comGG 191968..192465 (-) 498 WP_003108640.1 competence type IV pilus minor pilin ComGG -
  ACG3JJ_RS00975 (ACG3JJ_00975) comGF/cglF 192443..192880 (-) 438 WP_003102915.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACG3JJ_RS00980 (ACG3JJ_00980) comGE 192858..193157 (-) 300 WP_259966510.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACG3JJ_RS00985 (ACG3JJ_00985) comGD 193129..193572 (-) 444 WP_307877782.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACG3JJ_RS00990 (ACG3JJ_00990) comGC 193526..193846 (-) 321 WP_013794397.1 competence type IV pilus major pilin ComGC Machinery gene
  ACG3JJ_RS00995 (ACG3JJ_00995) - 194499..195224 (-) 726 WP_013794398.1 peptidoglycan amidohydrolase family protein -
  ACG3JJ_RS01000 (ACG3JJ_01000) - 195217..195681 (-) 465 WP_013794399.1 phage holin family protein -
  ACG3JJ_RS01005 (ACG3JJ_01005) - 195685..195834 (-) 150 WP_259966511.1 hypothetical protein -
  ACG3JJ_RS01010 (ACG3JJ_01010) - 195897..196235 (-) 339 WP_013794400.1 DUF1366 domain-containing protein -
  ACG3JJ_RS01015 (ACG3JJ_01015) - 196284..198140 (-) 1857 WP_013794401.1 DUF859 family phage minor structural protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16724.50 Da        Isoelectric Point: 9.9277

>NTDB_id=948502 ACG3JJ_RS00985 WP_307877782.1 193129..193572(-) (comGD) [Streptococcus parauberis strain DB-M5]
MIIIKNTVIKSQMLNKEVSAFTYFESLLCLVITCFSVIILTTSVGTVFEKVTNNLFYIEFENFYRHSQKISILKRVAGTM
VFKEKSISYHNETITLPDTIRLGFVNKVKINQFGGNHSLAKINFISSDETVTYTLNLGSGTYKKTKN

Nucleotide


Download         Length: 444 bp        

>NTDB_id=948502 ACG3JJ_RS00985 WP_307877782.1 193129..193572(-) (comGD) [Streptococcus parauberis strain DB-M5]
ATGATTATTATAAAAAACACAGTGATAAAATCCCAAATGTTAAATAAGGAAGTATCAGCGTTTACCTATTTTGAATCTTT
ACTATGTCTAGTAATTACTTGTTTTTCAGTTATTATATTGACAACAAGTGTGGGTACAGTATTTGAAAAAGTTACAAATA
ATCTATTCTATATTGAATTTGAAAATTTTTATCGGCATAGTCAAAAAATTTCCATACTAAAACGGGTTGCAGGAACAATG
GTATTTAAGGAAAAATCAATTTCATATCACAATGAAACAATTACCTTACCAGATACAATCAGACTTGGATTTGTTAACAA
GGTAAAGATAAACCAGTTTGGTGGAAATCATTCCCTTGCTAAAATAAATTTTATTAGTTCGGATGAAACTGTTACTTATA
CTCTAAATTTAGGAAGTGGTACTTATAAAAAAACAAAAAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA140

40.458

89.116

0.361
  comGD Streptococcus mutans UA159

40.458

89.116

0.361