Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/blpR   Type   Regulator
Locus tag   ACG3JF_RS09495 Genome accession   NZ_CP171732
Coordinates   1850829..1851590 (+) Length   253 a.a.
NCBI ID   WP_003106320.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M3     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1845829..1856590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JF_RS09465 (ACG3JF_09465) - 1845943..1846350 (+) 408 WP_003105517.1 diacylglycerol kinase family protein -
  ACG3JF_RS09470 (ACG3JF_09470) era 1846364..1847263 (+) 900 WP_003106308.1 GTPase Era -
  ACG3JF_RS09475 (ACG3JF_09475) - 1847448..1847924 (+) 477 WP_003106309.1 NUDIX hydrolase -
  ACG3JF_RS09480 (ACG3JF_09480) - 1848069..1848458 (+) 390 WP_013793714.1 hypothetical protein -
  ACG3JF_RS09485 (ACG3JF_09485) - 1848516..1849307 (+) 792 WP_045406685.1 hypothetical protein -
  ACG3JF_RS09490 (ACG3JF_09490) - 1849910..1850542 (+) 633 WP_003106318.1 ATP-binding cassette domain-containing protein -
  ACG3JF_RS09495 (ACG3JF_09495) comE/blpR 1850829..1851590 (+) 762 WP_003106320.1 response regulator transcription factor Regulator
  ACG3JF_RS09500 (ACG3JF_09500) - 1852010..1852297 (+) 288 WP_003106321.1 bacteriocin immunity protein -
  ACG3JF_RS09505 (ACG3JF_09505) mutM 1852653..1853477 (+) 825 WP_037619770.1 DNA-formamidopyrimidine glycosylase -
  ACG3JF_RS09510 (ACG3JF_09510) coaE 1853470..1854059 (+) 590 Protein_1826 dephospho-CoA kinase -
  ACG3JF_RS09515 (ACG3JF_09515) - 1854067..1854723 (+) 657 WP_003103741.1 YitT family protein -
  ACG3JF_RS09520 (ACG3JF_09520) - 1854844..1856345 (+) 1502 Protein_1828 helicase HerA-like domain-containing protein -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29691.05 Da        Isoelectric Point: 6.8700

>NTDB_id=948487 ACG3JF_RS09495 WP_003106320.1 1850829..1851590(+) (comE/blpR) [Streptococcus parauberis strain DB-M3]
MNIFVLEDVIRQQLHMETVIEKVLNQNNWFCNQLEFFGRGEQLLDHVNEKGSHQLFFLDIEIHQNKIKGLEIAKSIREND
PYATIVFVSNHVELIPLVFKYQIKALDLINKKLAYEEFEERIYATIKHVQNNNNCDLSDECFIFDSKQAHIHIPYYQLLF
VDTSGASHNLILHSLYGQIEIKGTLLQVLESEPRLFRCHRSFVINLSNVVSIDKQNRIITFKNGSKCDISRDKVKEVIKG
RTYYSCFFQGKDY

Nucleotide


Download         Length: 762 bp        

>NTDB_id=948487 ACG3JF_RS09495 WP_003106320.1 1850829..1851590(+) (comE/blpR) [Streptococcus parauberis strain DB-M3]
ATGAATATATTCGTATTAGAAGATGTCATTCGTCAGCAGTTACATATGGAGACAGTAATCGAAAAAGTTCTCAATCAAAA
TAATTGGTTTTGTAACCAATTAGAATTTTTTGGACGAGGTGAGCAACTATTAGATCATGTCAATGAAAAAGGTAGTCATC
AATTATTTTTTCTTGACATTGAAATTCATCAAAACAAGATAAAAGGTCTCGAGATTGCTAAATCAATTAGGGAGAATGAT
CCTTACGCAACAATTGTTTTTGTTTCAAATCATGTCGAATTGATACCTCTTGTTTTTAAATATCAAATCAAAGCATTAGA
TTTGATTAATAAAAAGTTGGCTTATGAGGAATTTGAAGAGCGAATTTATGCAACAATTAAACATGTTCAGAATAATAACA
ATTGTGACTTATCCGATGAATGTTTCATTTTTGATTCAAAACAAGCTCATATACATATTCCTTATTATCAGCTGTTATTT
GTTGATACTTCAGGAGCATCCCATAATCTTATTTTACATTCTTTATATGGACAAATTGAGATCAAAGGAACCTTATTACA
GGTATTAGAAAGTGAACCAAGATTATTTCGGTGTCATAGATCATTTGTAATTAATTTAAGTAATGTGGTAAGTATTGATA
AACAAAATAGAATTATCACATTCAAAAATGGTAGCAAATGTGATATTTCTAGAGACAAAGTTAAAGAAGTCATAAAAGGA
AGAACGTATTATTCTTGTTTTTTTCAAGGAAAAGATTATTGA

Domains

Predicted by InterProScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(16-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

41.597

94.071

0.391
  comE/comE1 Streptococcus equinus JB1

39.916

94.071

0.375