Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   ACG3JF_RS04335 Genome accession   NZ_CP171732
Coordinates   886681..887715 (-) Length   344 a.a.
NCBI ID   WP_013793667.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M3     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 881681..892715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JF_RS04300 (ACG3JF_04300) - 882468..882770 (-) 303 WP_003103628.1 YlxQ-related RNA-binding protein -
  ACG3JF_RS04305 (ACG3JF_04305) rnpM 882763..883059 (-) 297 WP_003104517.1 RNase P modulator RnpM -
  ACG3JF_RS04310 (ACG3JF_04310) nusA 883075..884229 (-) 1155 WP_013793668.1 transcription termination factor NusA -
  ACG3JF_RS04315 (ACG3JF_04315) rimP 884318..884800 (-) 483 WP_003102760.1 ribosome maturation factor RimP -
  ACG3JF_RS04325 (ACG3JF_04325) trmB 885194..885829 (-) 636 WP_003107546.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ACG3JF_RS04330 (ACG3JF_04330) ccrZ 885829..886620 (-) 792 WP_003107547.1 cell cycle regulator CcrZ -
  ACG3JF_RS04335 (ACG3JF_04335) pptB 886681..887715 (-) 1035 WP_013793667.1 ABC transporter permease Regulator
  ACG3JF_RS04340 (ACG3JF_04340) pptA 887718..888443 (-) 726 WP_003105648.1 ABC transporter ATP-binding protein Regulator
  ACG3JF_RS04345 (ACG3JF_04345) - 888705..889124 (+) 420 WP_003103589.1 HIT family protein -
  ACG3JF_RS04350 (ACG3JF_04350) - 889121..889423 (+) 303 WP_003104696.1 hypothetical protein -
  ACG3JF_RS04355 (ACG3JF_04355) brpA 889456..890745 (-) 1290 WP_013793666.1 biofilm formation/cell division transcriptional regulator BrpA -
  ACG3JF_RS04360 (ACG3JF_04360) - 890754..891278 (-) 525 WP_013793665.1 GNAT family N-acetyltransferase -
  ACG3JF_RS04365 (ACG3JF_04365) tsaE 891265..891714 (-) 450 WP_003103132.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40041.82 Da        Isoelectric Point: 9.9510

>NTDB_id=948435 ACG3JF_RS04335 WP_013793667.1 886681..887715(-) (pptB) [Streptococcus parauberis strain DB-M3]
MEELFKKRKQDFQKLHRKYLPYVLNDHFVLVLVFLLGYVLYQYSQLLRHFPENHWPIIICLILLTFFLLQVGSVATYLEE
ADRQFLLAKENQLITYIDRAGRHSFVSGTVIQSVCLALLFPILARLGLSLTLFVLMLVLLAGLKWLIQKRKVAALMADSG
LNWDASIVIEKRRKQQILKFYSLFVNVKGVSTSVKERSYLNPLLRTVEKKSGSHWLNLFARAFLRSSDYLGLYIRLTFLA
LLSLIFISNDYLSMALALIFDYLLLFQLLSLYHHFDYHYLSILYPEDSKQKKADLLKLLRGVSLVLLIIEIGFTGNFINA
VIMTIFFGVMAYLYLPYKLKNIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=948435 ACG3JF_RS04335 WP_013793667.1 886681..887715(-) (pptB) [Streptococcus parauberis strain DB-M3]
ATGGAAGAATTGTTTAAAAAACGAAAGCAGGACTTTCAAAAACTTCATCGTAAGTATCTCCCCTATGTTCTGAATGATCA
TTTTGTGCTTGTACTAGTCTTTTTATTAGGCTATGTTTTATATCAATATAGCCAACTCTTGCGCCATTTTCCTGAAAATC
ACTGGCCAATTATTATTTGTCTAATTTTATTAACCTTCTTTTTATTACAGGTTGGCTCTGTGGCGACTTATTTGGAAGAG
GCTGACCGTCAGTTCTTGCTTGCCAAAGAAAATCAACTGATTACCTATATAGACAGAGCTGGGCGTCACTCATTTGTTAG
TGGAACTGTGATTCAAAGCGTTTGTTTAGCTCTGCTATTCCCCATCTTAGCAAGACTTGGCCTATCGCTGACGCTCTTTG
TTCTCATGTTGGTACTCTTAGCTGGTTTGAAGTGGTTGATCCAGAAAAGGAAAGTAGCTGCGCTGATGGCCGATAGTGGC
TTGAATTGGGATGCTAGTATTGTCATTGAGAAAAGACGAAAGCAACAAATTCTGAAGTTTTATTCCCTTTTTGTAAATGT
CAAGGGTGTATCCACCAGTGTAAAAGAAAGATCTTACTTAAATCCGCTTTTAAGAACTGTTGAAAAAAAATCAGGCTCAC
ATTGGCTCAATCTCTTTGCGCGTGCTTTTTTGCGAAGCTCAGATTATCTTGGTCTCTATATTAGATTAACCTTTTTAGCA
TTATTATCACTAATATTTATTAGTAATGATTATTTATCAATGGCTTTGGCGTTGATTTTTGACTACCTTTTATTATTTCA
ATTGCTGTCACTATATCATCATTTTGATTATCATTACTTATCAATTTTATATCCGGAAGATAGTAAGCAAAAGAAAGCTG
ATTTACTCAAATTATTACGAGGGGTATCTTTGGTTTTATTGATCATAGAGATTGGATTTACAGGCAATTTCATAAATGCT
GTAATCATGACTATCTTCTTTGGGGTAATGGCCTATCTCTATTTGCCTTATAAGTTAAAGAACATAATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(3-154)

Bacterial ABC transporter protein EcsB (EcsB)

(158-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.314

100

0.433
  pptB Streptococcus salivarius strain HSISS4

41.86

100

0.419