Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R8609_RS05680 Genome accession   NZ_AP028412
Coordinates   1098700..1099251 (+) Length   183 a.a.
NCBI ID   WP_317694076.1    Uniprot ID   -
Organism   Campylobacter jejuni strain IDH-12128     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1093700..1104251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8609_RS05645 (I12128_11190) - 1093889..1094314 (+) 426 WP_002859154.1 GNAT family N-acetyltransferase -
  R8609_RS05650 (I12128_11200) - 1094378..1094999 (+) 622 Protein_1095 NAD(P)H-dependent oxidoreductase -
  R8609_RS05655 (I12128_11210) - 1094999..1095604 (+) 606 WP_032586321.1 NAD(P)H-dependent oxidoreductase -
  R8609_RS05660 (I12128_11220) pgsA 1095729..1096265 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R8609_RS05665 (I12128_11230) rseP 1096262..1097368 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  R8609_RS05670 (I12128_11240) - 1097361..1098227 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  R8609_RS05675 (I12128_11250) rpsF 1098314..1098691 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  R8609_RS05680 (I12128_11260) ssb 1098700..1099251 (+) 552 WP_317694076.1 single-stranded DNA-binding protein Machinery gene
  R8609_RS05685 (I12128_11270) rpsR 1099262..1099522 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  R8609_RS05690 (I12128_11280) lon 1099583..1101958 (-) 2376 WP_002853487.1 endopeptidase La -
  R8609_RS05695 (I12128_11290) - 1101975..1102622 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  R8609_RS05700 (I12128_11300) fliW 1102783..1103172 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  R8609_RS05705 (I12128_11310) proC 1103172..1103903 (+) 732 WP_317694077.1 pyrroline-5-carboxylate reductase Machinery gene
  R8609_RS05710 (I12128_11320) ctsT 1103900..1104202 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20725.66 Da        Isoelectric Point: 5.0431

>NTDB_id=94834 R8609_RS05680 WP_317694076.1 1098700..1099251(+) (ssb) [Campylobacter jejuni strain IDH-12128]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLIKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNTPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQSP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=94834 R8609_RS05680 WP_317694076.1 1098700..1099251(+) (ssb) [Campylobacter jejuni strain IDH-12128]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTATAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATACTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAGAGAAACCAAAGCCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361

Multiple sequence alignment